RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 GEMIN6Q8WXD5 167 aaKnown RBP14.19□□□□□ -0.14
CUX1-215ENST00000556210 TMEM19Q96HH6 336 aa14.19□□□□□ -0.14
CUX1-215ENST00000556210 CNDP2Q96KP4 475 aaKnown RBP14.19□□□□□ -0.14
CUX1-215ENST00000556210 PRRG3Q9BZD7 231 aa14.19□□□□□ -0.14
CUX1-215ENST00000556210 RC3H2Q9HBD1 1191 aaKnown RBP14.19□□□□□ -0.14
CUX1-215ENST00000556210 COMMD3Q9UBI1 195 aa14.19□□□□□ -0.14
CUX1-215ENST00000556210 SPIN1Q9Y657 262 aaPredicted RBP14.19□□□□□ -0.14
CUX1-215ENST00000556210 PMF1-BGLAPU3KQ54 211 aa14.19□□□□□ -0.14
CUX1-215ENST00000556210 ANHXE9PGG2 379 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 GAPDHSO14556 408 aaPredicted RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 AP3D1O14617 1153 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 RB1P06400 928 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 PSMA1P25786 263 aaKnown RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 OLR1P78380 273 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 SP140Q13342 867 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 POMZP3Q6PJE2 187 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 PLEKHM3Q6ZWE6 761 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 RAB43Q86YS6 212 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 OXR1Q8N573 874 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 CSF3RQ99062 836 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 OR51V1Q9H2C8 321 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 MMP27Q9H306 513 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 BRCA1P38398 1863 aaKnown RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 H3BSH0 61 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 PPM1DO15297 605 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 IL12RB1P42701 662 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 ZNF234Q14588 700 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 PDGFRLQ15198 375 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 PYDC2Q56P42 97 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 FAM131AQ6UXB0 335 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 NUDT13Q86X67 352 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 MRPL43Q8N983 215 aaKnown RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 DNAJB8Q8NHS0 232 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 TEX47Q8TBZ9 253 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 IPCEF1Q8WWN9 437 aaPredicted RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 SLC38A4Q969I6 547 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 ALG14Q96F25 216 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 HDHD2Q9H0R4 259 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 TIGARQ9NQ88 270 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 CA5BQ9Y2D0 317 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 SOBPA7XYQ1 873 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 TLR4O00206 839 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 CACNB4O00305 520 aaPredicted RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 H1F0P07305 194 aaKnown RBP14.18□□□□□ -0.14
CUX1-215ENST00000556210 CA3P07451 260 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 MAP4K2Q12851 820 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 SLC9A5Q14940 896 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 IRAK1BP1Q5VVH5 260 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 LIPKQ5VXJ0 399 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 REEP3Q6NUK4 255 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 SFTPA1Q8IWL2 248 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 PLA2G15Q8NCC3 412 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 ERVK13-1Q9NX77 482 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 ANKMY1Q9P2S6 941 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 HCN4Q9Y3Q4 1203 aa14.18□□□□□ -0.14
CUX1-215ENST00000556210 HNRNPCL2B2RXH8 293 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 CASKO14936 926 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 C1orf105O95561 183 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 SLC15A1P46059 708 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 SF3B4Q15427 424 aaKnown RBP eCLIP14.17□□□□□ -0.145e-6■■■■□ 20.8
CUX1-215ENST00000556210 ZNF750Q32MQ0 723 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 INAVAQ3KP66 663 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 DESI1Q6ICB0 168 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 TADA1Q96BN2 335 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 SAMD11Q96NU1 681 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 NIPSNAP1Q9BPW8 284 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 SLC6A17Q9H1V8 727 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 NDOR1Q9UHB4 597 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 A6NL46 340 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 PRR35P0CG20 571 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 SAGP10523 405 aaPredicted RBP14.17□□□□□ -0.14
CUX1-215ENST00000556210 NR2F6P10588 404 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 CD22P20273 847 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 NT5EP21589 574 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 ANXA11P50995 505 aaKnown RBP14.17□□□□□ -0.14
CUX1-215ENST00000556210 GP2P55259 537 aaKnown RBP14.17□□□□□ -0.14
CUX1-215ENST00000556210 TAP2Q03519 686 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 CRTC2Q53ET0 693 aaPredicted RBP14.17□□□□□ -0.14
CUX1-215ENST00000556210 ZNF544Q6NX49 715 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 DIRAS2Q96HU8 199 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 DOK1Q99704 481 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 DPEP2Q9H4A9 486 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 PTGFRNQ9P2B2 879 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 SSR3Q9UNL2 185 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 PRRT4C9JH25 899 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 CSF2P04141 144 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 CYP17A1P05093 508 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 IGFBP1P08833 259 aaPredicted RBP14.17□□□□□ -0.14
CUX1-215ENST00000556210 ZNF24P17028 368 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 ELAVL3Q14576 367 aaKnown RBP14.17□□□□□ -0.14
CUX1-215ENST00000556210 UBE2UQ5VVX9 321 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 XAF1Q6GPH4 301 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 GRHL2Q6ISB3 625 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 KLHL17Q6TDP4 642 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 NEK10Q6ZWH5 1172 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 OOSP2Q86WS3 158 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 PRSS58Q8IYP2 241 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.17□□□□□ -0.14
CUX1-215ENST00000556210 DNASE1L2Q92874 299 aa14.17□□□□□ -0.14
CUX1-215ENST00000556210 ZNF689Q96CS4 500 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms