RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CSF3P09919 207 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 HSD3B1P14060 373 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 ENDOUP21128 410 aaKnown RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 HSD3B2P26439 372 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 HNF4AP41235 474 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 CTSCP53634 463 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 RPS26P62854 115 aaKnown RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 MEF2AQ02078 507 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 RHAGQ02094 409 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 RBBP4Q09028 425 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SP140Q13342 867 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 KCNC3Q14003 757 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 LARS2Q15031 903 aaKnown RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SPHARQ15513 63 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 CCDC58Q4VC31 144 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 CRB2Q5IJ48 1285 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 PLEKHS1Q5SXH7 462 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 ARMC4Q5T2S8 1044 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 LIPKQ5VXJ0 399 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 TMIGD1Q6UXZ0 262 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 CEACAM20Q6UY09 585 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 DPY19L3Q6ZPD9 716 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 COMMD6Q7Z4G1 85 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF438Q7Z4V0 828 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 RAB43Q86YS6 212 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 TRIM48Q8IWZ4 208 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SLC34A3Q8N130 599 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SYT14Q8NB59 555 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 CHST14Q8NCH0 376 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 GPR32P1Q8NGA4 272 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 OR4D11Q8NGI4 311 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SLC7A6Q92536 515 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 NEIL2Q969S2 332 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 NECTIN4Q96NY8 510 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 ZIC5Q96T25 663 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SPSB2Q99619 263 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 MAPKAP1Q9BPZ7 522 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 WRAP53Q9BUR4 548 aaKnown RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 PRRG3Q9BZD7 231 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 C11orf54Q9H0W9 315 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SPNS1Q9H2V7 528 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 OR51B5Q9H339 312 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 SUV39H2Q9H5I1 410 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 REEP4Q9H6H4 257 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 BRF2Q9HAW0 419 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 GPBP1L1Q9HC44 474 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-212ENST00000552491 CLN6Q9NWW5 311 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 ATP6V1HQ9UI12 483 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 PPIL1Q9Y3C6 166 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 YIPF1Q9Y548 306 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 PCDHB7Q9Y5E2 793 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 ENPP4Q9Y6X5 453 aa5.17□□□□□ -1.58
LIMA1-212ENST00000552491 A0A0G2JMP0 313 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 HMX3A6NHT5 357 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 B4DXG7 233 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF670-ZNF695F2Z2N8 137 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TLR4O00206 839 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PLA2G10O15496 165 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TSPAN6O43657 245 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PSIP1O75475 530 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 SLCO2B1O94956 709 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CDRT1O95170 752 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 EFEMP2O95967 443 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TGFB1P01137 390 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TP53P04637 393 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GSTM1P09488 218 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FURINP09958 794 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TRAPPC2P0DI81 140 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TRAPPC2BP0DI82 140 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ARAFP10398 606 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PIPP12273 146 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ITGB7P26010 798 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PDHA2P29803 388 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 KIR2DL3P43628 341 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 RPS5P46782 204 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PRIM2P49643 509 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ACLYP53396 1101 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 DAB2P98082 770 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF91Q05481 1191 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PRKCZQ05513 592 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PCDH1Q08174 1060 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ELAVL2Q12926 359 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 VEPH1Q14D04 833 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 YIF1BQ5BJH7 314 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 SLCO4C1Q6ZQN7 724 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 Q6ZVL8 140 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 HSD11B1LQ7Z5J1 315 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 DNAJB7Q7Z6W7 309 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TMPRSS11BQ86T26 416 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 COMTD1Q86VU5 262 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PHC2Q8IXK0 858 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 IQCF1Q8N6M8 205 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FAM181AQ8N9Y4 354 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TP53I13Q8NBR0 393 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 SIMC1Q8NDZ2 872 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FAM46DQ8NEK8 389 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GEMIN6Q8WXD5 167 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CLP1Q92989 425 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms