RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MARK1Q9P0L2 795 aa16.08■□□□□ 0.17
USP28-208ENST00000540438 TSPAN11A1L157 253 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 PI15O43692 258 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 OR10H3O60404 316 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 RECKO95980 971 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ITGAMP11215 1152 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 JUNBP17275 347 aaPredicted RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 CNR2P34972 360 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 PCGF2P35227 344 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 SSR2P43308 183 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ST13P50502 369 aaKnown RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 ID2Q02363 134 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 DUSP2Q05923 314 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ST3GAL4Q11206 333 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 GRSF1Q12849 480 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP28-208ENST00000540438 PTGES3Q15185 160 aaKnown RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 INAQ16352 499 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 C18orf63Q68DL7 685 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 C6orf120Q7Z4R8 191 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 STX19Q8N4C7 294 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 OR52N2Q8NGI0 321 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 TM4SF18Q96CE8 201 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 LGALS12Q96DT0 336 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 C16orf58Q96GQ5 468 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 DUSP21Q9H596 190 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 C6orf106Q9H6K1 298 aaPredicted RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 ACER3Q9NUN7 267 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ATAD3AQ9NVI7 634 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ZNF226Q9NYT6 803 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 DAPK2Q9UIK4 370 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 KCNE3Q9Y6H6 103 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 HYAL3O43820 417 aaPredicted RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 EML2O95834 649 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 LBX1P52954 281 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 SLC13A2Q13183 592 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 VEZF1Q14119 521 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 KHDRBS2Q5VWX1 349 aaKnown RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 RNF165Q6ZSG1 346 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 LRRTM4Q86VH4 590 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 DNAJB8Q8NHS0 232 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 BORCS5Q969J3 196 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 RDH12Q96NR8 316 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ALPK1Q96QP1 1244 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ABCB10Q9NRK6 738 aa16.08■□□□□ 0.16
USP28-208ENST00000540438 ARHGEF17Q96PE2 2063 aaPredicted RBP16.08■□□□□ 0.16
USP28-208ENST00000540438 QSOX1O00391 747 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 PRMT3O60678 531 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 NFATC1O95644 943 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 CCDC159P0C7I6 412 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 LASP1Q14847 261 aaKnown RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 IRF4Q15306 451 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 RFX4Q33E94 735 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 COLEC12Q5KU26 742 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TRIM40Q6P9F5 258 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 PAQR6Q6TCH4 344 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 PARM1Q6UWI2 310 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TRIM73Q86UV7 250 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TSPYL5Q86VY4 417 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 FBXL6Q8N531 539 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 ZNF513Q8N8E2 541 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 DRAXINQ8NBI3 349 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 FLCNQ8NFG4 579 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 LZICQ8WZA0 190 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 REPS1Q96D71 796 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 ZHX1-C8orf76Q96EF9 292 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 FAM83CQ9BQN1 747 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 ZNF717Q9BY31 904 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 AICDAQ9GZX7 198 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 MVB12BQ9H7P6 319 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 NMNAT1Q9HAN9 279 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 MAFFQ9ULX9 164 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 NTNG1Q9Y2I2 539 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 STON1Q9Y6Q2 735 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3DA0A087WVF3 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3IA0A087WXS9 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3EA0A087X179 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3KA0A087X1G2 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 IGKV1-8A0A0C4DH67 115 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 PRAMEF27A3QJZ7 478 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3FA6NER0 549 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3LB9A6J9 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3HP0C7X1 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 BMP4P12644 408 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 MOGQ16653 247 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3GQ6DHY5 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3CQ6IPX1 549 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 FAHD1Q6P587 224 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 ZNF793Q6ZN11 406 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 DCDC5Q6ZRR9 648 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 PDZD3Q86UT5 571 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TBC1D3Q8IZP1 549 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 CHCHD4Q8N4Q1 142 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 GPR32P1Q8NGA4 272 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 OR4E2Q8NGC2 313 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 OR52E4Q8NGH9 312 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 TUBA1CQ9BQE3 449 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 PBX4Q9BYU1 374 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 BHLHE41Q9C0J9 482 aaPredicted RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 TPK1Q9H3S4 243 aa16.07■□□□□ 0.16
USP28-208ENST00000540438 SERHL2Q9H4I8 314 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms