RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 TEKQ02763 1124 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 OCA2Q04671 838 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 ITGADQ13349 1161 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 ZNF846Q147U1 533 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 MLF2Q15773 248 aaPredicted RBP16.71■□□□□ 0.27
USH1C-205ENST00000527020 TBCEQ15813 527 aaPredicted RBP16.71■□□□□ 0.27
USH1C-205ENST00000527020 C2orf27AQ580R0 203 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.71■□□□□ 0.27
USH1C-205ENST00000527020 LINC00299Q6ZSB3 139 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 NLGN4XQ8N0W4 816 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 TMCO5AQ8N6Q1 288 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 SLC38A4Q969I6 547 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 GTPBP3Q969Y2 492 aaKnown RBP16.71■□□□□ 0.27
USH1C-205ENST00000527020 PPP1R14BQ96C90 147 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 LGALS12Q96DT0 336 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 TMEM19Q96HH6 336 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 ITPAQ9BY32 194 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 NT5DC2Q9H857 520 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 WBP1LQ9NX94 342 aa16.71■□□□□ 0.27
USH1C-205ENST00000527020 TEX10Q9NXF1 929 aaPredicted RBP16.71■□□□□ 0.27
USH1C-205ENST00000527020 IGKV1-8A0A0C4DH67 115 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 GRXCR1A8MXD5 290 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 FAM227AF5H4B4 570 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 KMOO15229 486 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 NDUFS4O43181 175 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 CCNB2O95067 398 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 IFNW1P05000 195 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 WASP42768 502 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 HSPB3Q12988 150 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 FGL2Q14314 439 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 HEPACAMQ14CZ8 416 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 SYT16Q17RD7 645 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PAGE2Q7Z2X7 111 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 MFSD4AQ8N468 514 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 AQP11Q8NBQ7 271 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 DENND6BQ8NEG7 585 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 UTP15Q8TED0 518 aaKnown RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 FCGR1BQ92637 280 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PCBD2Q9H0N5 130 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 SERHL2Q9H4I8 314 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 TRPV4Q9HBA0 871 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 GPR83Q9NYM4 423 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 FTSJ1Q9UET6 329 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 FAM32AQ9Y421 112 aaKnown RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 ATG2BQ96BY7 2078 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PPM1DO15297 605 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 MFN2O95140 757 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PCDH8O95206 1070 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 KAT7O95251 611 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 GASTP01350 101 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 SLC35G4P0C7Q5 338 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 CSNK1G2P78368 415 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 KCNC4Q03721 635 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 GPM6BQ13491 265 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 ATP1A4Q13733 1029 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PTGES3Q15185 160 aaKnown RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 DGUOKQ16854 277 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 FAM46CQ5VWP2 391 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 KLHL17Q6TDP4 642 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 C6orf120Q7Z4R8 191 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 ZNF554Q86TJ5 538 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PLD3Q8IV08 490 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 PHF10Q8WUB8 498 aaKnown RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 RAB8BQ92930 207 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 MYDGFQ969H8 173 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 EXOSC8Q96B26 276 aaKnown RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 ALPK1Q96QP1 1244 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 INSM2Q96T92 566 aaPredicted RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 SLIRPQ9GZT3 109 aaKnown RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 NMNAT1Q9HAN9 279 aaPredicted RBP16.7■□□□□ 0.26
USH1C-205ENST00000527020 FBXO8Q9NRD0 319 aa16.7■□□□□ 0.26
USH1C-205ENST00000527020 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.7■□□□□ 0.26
USH1C-205ENST00000527020 UNC80Q8N2C7 3258 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 ARRDC5A6NEK1 342 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 HMGN4O00479 90 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 OR1F1O43749 312 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 CBFA2T3O75081 653 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 CA3P07451 260 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 STSP08842 583 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 OCM2P0CE71 109 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 OCMP0CE72 109 aaPredicted RBP16.69■□□□□ 0.26
USH1C-205ENST00000527020 SERPINB1P30740 379 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 FOXD4Q12950 439 aaPredicted RBP16.69■□□□□ 0.26
USH1C-205ENST00000527020 RUNX3Q13761 415 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 IRF4Q15306 451 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 CST6Q15828 149 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 FAM109BQ6ICB4 259 aaPredicted RBP16.69■□□□□ 0.26
USH1C-205ENST00000527020 KIAA1161Q6NSJ0 714 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 NUDT13Q86X67 352 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 NATD1Q8N6N6 113 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 TP53I13Q8NBR0 393 aaPredicted RBP16.69■□□□□ 0.26
USH1C-205ENST00000527020 OR6Q1Q8NGQ2 317 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 ZNF764Q96H86 408 aaPredicted RBP16.69■□□□□ 0.26
USH1C-205ENST00000527020 TEFMQ96QE5 360 aaKnown RBP16.69■□□□□ 0.26
USH1C-205ENST00000527020 ZNF556Q9HAH1 456 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 NEUROD4Q9HD90 331 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 HMG20AQ9NP66 347 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 PRDM8Q9NQV8 689 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 OBP2AQ9NY56 170 aa16.69■□□□□ 0.26
USH1C-205ENST00000527020 OSGIN1Q9UJX0 560 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms