RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TSPYL5Q86VY4 417 aaPredicted RBP12.15□□□□□ -0.46
USP53-209ENST00000514665 LNX2Q8N448 690 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 RNF175Q8N4F7 328 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TMEM151AQ8N4L1 468 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 SLC37A3Q8NCC5 494 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 PROKR2Q8NFJ6 384 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 MYLIPQ8WY64 445 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TTYH2Q9BSA4 534 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TBL1XR1Q9BZK7 514 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TRIM2Q9C040 744 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 RETREG1Q9H6L5 497 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 PKD1L3Q7Z443 1732 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 M0R129 80 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 MUSKO15146 869 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 ENTPD6O75354 484 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 YES1P07947 543 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 HK1P19367 917 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 CNR2P34972 360 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 ZNF140P52738 457 aaPredicted RBP12.15□□□□□ -0.46
USP53-209ENST00000514665 CDK5R2Q13319 367 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 DCP2Q8IU60 420 aaKnown RBP12.15□□□□□ -0.46
USP53-209ENST00000514665 OR9Q2Q8NGE9 314 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 MS4A4AQ96JQ5 239 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 DPYSL5Q9BPU6 564 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 EHD1Q9H4M9 534 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 C11orf49Q9H6J7 331 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 IL20RAQ9UHF4 553 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 A0A1B0GVT2 93 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ZNF879B4DU55 563 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ANHXE9PGG2 379 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 GABBR2O75899 941 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 IGFBP6P24592 240 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 POLR2IP36954 125 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 OPRL1P41146 370 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 PPP3R1P63098 170 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ELAVL3Q14576 367 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 SLC36A4Q6YBV0 504 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 FIBINQ8TAL6 211 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 DNAJA3Q96EY1 480 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 TMEM19Q96HH6 336 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 UBXN10Q96LJ8 280 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ADAD1Q96M93 576 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 STOX2Q9P2F5 926 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 COPS7AQ9UBW8 275 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 PCDHGB7Q9Y5F8 929 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 GRXCR1A8MXD5 290 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 CDC123O75794 336 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 UBXN7O94888 489 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 GSRP00390 522 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ATXN1LP0C7T5 689 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 GADD45AP24522 165 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 KCNC1P48547 511 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ZNF45Q02386 682 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ALKBH2Q6NS38 261 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 OR4N5Q8IXE1 308 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 OR8K5Q8NH50 307 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 NEIL3Q8TAT5 605 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ZNF689Q96CS4 500 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 BHLHE41Q9C0J9 482 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 RNF38Q9H0F5 515 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 EXO5Q9H790 373 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 PLEKHA1Q9HB21 404 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ENAMQ9NRM1 1142 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 TBCCD1Q9NVR7 557 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 MBD2Q9UBB5 411 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 PFDN2Q9UHV9 154 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 SARDHQ9UL12 918 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ZFR2Q9UPR6 939 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 HEMK1Q9Y5R4 338 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 TRAV6A0A075B6T7 132 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 IGLON5A6NGN9 336 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 KHNYNO15037 678 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 SCAMP2O15127 329 aaKnown RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 ARL6IP5O75915 188 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 DNAJB5O75953 348 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 SERPINA3P01011 423 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 C6P13671 934 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 DSG2Q14126 1118 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 NXPE4Q6UWF7 544 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 CHCHD4Q8N4Q1 142 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 OR4K14Q8NGD5 310 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 SMPDL3BQ92485 455 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 SH3YL1Q96HL8 342 aaPredicted RBP12.14□□□□□ -0.47
USP53-209ENST00000514665 FUZQ9BT04 418 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 ACPTQ9BZG2 426 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 DKK3Q9UBP4 350 aa12.14□□□□□ -0.47
USP53-209ENST00000514665 DRGXA6NNA5 263 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 WASH4PA8MWX3 477 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 DLGAP1O14490 977 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 TGM5O43548 720 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 RAB36O95755 333 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 RETP07949 1114 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 CDK4P11802 303 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 BLKP51451 505 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 TBRG1Q3YBR2 411 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 SAMD12Q8N8I0 201 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 PHOSPHO1Q8TCT1 267 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 OSTF1Q92882 214 aa12.13□□□□□ -0.47
USP53-209ENST00000514665 NPLQ9BXD5 320 aaPredicted RBP12.13□□□□□ -0.47
USP53-209ENST00000514665 MAGIXQ9H6Y5 334 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms