RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 SYT14Q8NB59 555 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 PLA2G15Q8NCC3 412 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 CREB3L1Q96BA8 519 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 SPNS1Q9H2V7 528 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 TMEM38AQ9H6F2 299 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 C12orf4Q9NQ89 552 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 RHCGQ9UBD6 479 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 COMMD3Q9UBI1 195 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 DIMT1Q9UNQ2 313 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 YARS2Q9Y2Z4 477 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 SF3B6Q9Y3B4 125 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 HEPACAM2A8MVW5 462 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 QSOX1O00391 747 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 RNASET2O00584 256 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 BET1O15155 118 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 CLDN11O75508 207 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 RAE1P78406 368 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 OCLNQ16625 522 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 CEACAM20Q6UY09 585 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 LINGO4Q6UY18 593 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 TRILQ7L0X0 811 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 BCDIN3DQ7Z5W3 292 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 KCTD20Q7Z5Y7 419 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 OR52N2Q8NGI0 321 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 OR8J1Q8NGP2 316 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 WDR20Q8TBZ3 569 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 AIFM2Q9BRQ8 373 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 DNAJC11Q9NVH1 559 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 LHX3Q9UBR4 397 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 CRLS1Q9UJA2 301 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 KCNE2Q9Y6J6 123 aa16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 DNMT3AQ9Y6K1 912 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-211ENST00000506690 BTN3A3O00478 584 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 IGFBP1P08833 259 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ZNF250P15622 560 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 CD22P20273 847 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ENPP1P22413 925 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ASMTP46597 345 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 EVX1P49640 407 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 CPT1AP50416 773 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 BEX3Q00994 111 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 SUZ12Q15022 739 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 CST9Q5W186 159 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 FAM92BQ6ZTR7 304 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 OR8H3Q8N146 312 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 GOT1L1Q8NHS2 421 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 PPIL3Q9H2H8 161 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 PIGUQ9H490 435 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 RERGLQ9H628 205 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 SYNDIG1Q9H7V2 258 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ZFYVE1Q9HBF4 777 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 C1GALT1Q9NS00 363 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 HCN2Q9UL51 889 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 SPIN1Q9Y657 262 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 TRBV4-1A0A0J9YWV2 114 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 PRR23AA6NEV1 266 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 I3L521 148 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 FFAR1O14842 300 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 HPGDSO60760 199 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 CTSHP09668 335 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 DDX5P17844 614 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 HK1P19367 917 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ITPKAP23677 461 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ETV5P41161 510 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ETV1P50549 477 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 AGFG1P52594 562 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 CAV3P56539 151 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 PCBP3P57721 371 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 RPS25P62851 125 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 FOXD4Q12950 439 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 MBTPS1Q14703 1052 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 TMEM65Q6PI78 240 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 QSOX2Q6ZRP7 698 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 LAPTM4BQ86VI4 370 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 TAGAPQ8N103 731 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 ATAD1Q8NBU5 361 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 HJURPQ8NCD3 748 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 HUS1BQ8NHY5 278 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 METTL2AQ96IZ6 378 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 MTERF1Q99551 399 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 HEXA-AS1Q9H8Q6 139 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 KLHL42Q9P2K6 505 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 MALT1Q9UDY8 824 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 PHF11Q9UIL8 331 aa16.3■□□□□ 0.2
SQSTM1-211ENST00000506690 TRBC2A0A5B9 178 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 CHP2O43745 196 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 SOX14O95416 240 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 IFNA14P01570 189 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 CHRM5P08912 532 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 LHCGRP22888 699 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 SGSHP51688 502 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 BTG1P62324 171 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 HBA1P69905 142 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 CDK6Q00534 326 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 LRRC74AQ0VAA2 488 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 CDH18Q13634 790 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 CHRNA6Q15825 494 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 KLHL22Q53GT1 634 aa16.29■□□□□ 0.2
SQSTM1-211ENST00000506690 ATAT1Q5SQI0 421 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms