RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TBPL1P62380 186 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPL6Q02878 288 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EMX1Q04741 257 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ELAVL3Q14576 367 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TMEM215Q68D42 235 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LARP4Q71RC2 724 aaKnown RBP eCLIP10.3□□□□□ -0.767e-7■■■□□ 15.4
MSH5-SAPCD1-207ENST00000493662 ZNF557Q8N988 423 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AP3S1Q92572 193 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AASSQ9UDR5 926 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TMCC3Q9ULS5 477 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 WDR90Q96KV7 1748 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ARHGEF33A8MVX0 844 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 E2F3O00716 465 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF195O14628 629 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LCKP06239 509 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AK4P27144 223 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ARL4DP49703 201 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RORCP51449 518 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DDI2Q5TDH0 399 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CASP12Q6UXS9 341 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NRARPQ7Z6K4 114 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZZZ3Q8IYH5 903 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PHF10Q8WUB8 498 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BTN2A2Q8WVV5 523 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LCN9Q8WX39 176 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TIFAQ96CG3 184 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF641Q96N77 438 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BCL7BQ9BQE9 202 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GINS4Q9BRT9 223 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 COMMD3Q9UBI1 195 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MKL2Q9ULH7 1088 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAU2Q9Y6X3 613 aa10.3□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C8GP07360 202 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ENGP17813 658 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MYL12AP19105 171 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DEFA5Q01523 94 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EFR3AQ14156 821 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SBSNQ6UWP8 590 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DEF8Q6ZN54 512 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPR65Q8IYL9 337 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RAD51AP1Q96B01 352 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C17orf62Q9BQA9 187 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NTN4Q9HB63 628 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZBTB20Q9HC78 741 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 VAPAQ9P0L0 249 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPS6KA6Q9UK32 745 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NUP50Q9UKX7 468 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AP3M1Q9Y2T2 418 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RGPD3A6NKT7 1758 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RGPD4Q7Z3J3 1758 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TDRD15B5MCY1 1934 aaKnown RBP10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EDDM13A0A1B0GTR0 161 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FAM234BA2RU67 622 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OTOL1A6NHN0 477 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HMX3A6NHT5 357 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CASKO14936 926 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF81P51508 661 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GALEQ14376 348 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ESCO2Q56NI9 601 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PARM1Q6UWI2 310 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FUNDC1Q8IVP5 155 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PLA2G15Q8NCC3 412 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NELL1Q92832 810 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 F2RL3Q96RI0 385 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ZNF382Q96SR6 550 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CMTM6Q9NX76 183 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPRC5BQ9NZH0 403 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PLCL2Q9UPR0 1127 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PLEKHM1Q9Y4G2 1056 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 STON1Q9Y6Q2 735 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FADS2P1A8MWK0 482 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CLIC1O00299 241 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SCELO95171 688 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 HSD17B1P14061 328 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ITGA2P17301 1181 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AMD1P17707 334 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 POLR2CP19387 275 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GJA4P35212 333 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 Q6ZSR9 355 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TAF8Q7Z7C8 310 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ADIPOR2Q86V24 386 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC38A6Q8IZM9 456 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PARP16Q8N5Y8 322 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DTX3Q8N9I9 347 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LRRC3BQ96PB8 259 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DUSP26Q9BV47 211 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TMEM121BQ9BXQ6 578 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TEX12Q9BXU0 123 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KLHL31Q9H511 634 aa10.29□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SCO1O75880 301 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PDGFAP04085 211 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC2A2P11168 524 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SLC6A2P23975 617 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GADD45AP24522 165 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 DCDC1P59894 354 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FGFBP1Q14512 234 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C11orf88Q6PI97 169 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PTCHD4Q6ZW05 846 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 KRT78Q8N1N4 520 aa10.28□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CHDHQ8NE62 594 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms