RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SYNDIG1LA6NDD5 238 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 FAM227AF5H4B4 570 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 PCDH17O14917 1159 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 UBDO15205 165 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 TLX3O43711 291 aaPredicted RBP10.9□□□□□ -0.66
SCN9A-204ENST00000452182 PRMT3O60678 531 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 AIFM1O95831 613 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 RECKO95980 971 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 IL3P08700 152 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 G6PDP11413 515 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 IDO1P14902 403 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 DDCP20711 480 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 PTPN4P29074 926 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 DLSTP36957 453 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 MRPL19P49406 292 aaKnown RBP10.9□□□□□ -0.66
SCN9A-204ENST00000452182 DIO3P55073 304 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 C21orf58P58505 322 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 CLN3Q13286 438 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 TGIF1Q15583 401 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 GSTA3Q16772 222 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 C18orf63Q68DL7 685 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 OR52E8Q6IFG1 317 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 SPATA21Q7Z572 469 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 SCUBE1Q8IWY4 988 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 SHISA5Q8N114 240 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 LIX1Q8N485 282 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 FAM47BQ8NA70 645 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 PLPP5Q8NEB5 264 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 KIAA1143Q96AT1 154 aaPredicted RBP10.9□□□□□ -0.66
SCN9A-204ENST00000452182 ZNF764Q96H86 408 aaPredicted RBP10.9□□□□□ -0.66
SCN9A-204ENST00000452182 EGLN2Q96KS0 407 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 CSF3RQ99062 836 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 AIG1Q9NVV5 245 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 TAS2R7Q9NYW3 318 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 TCFL5Q9UL49 500 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 TRIM33Q9UPN9 1127 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 MAPRE3Q9UPY8 281 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 GPR45Q9Y5Y3 372 aa10.9□□□□□ -0.66
SCN9A-204ENST00000452182 AHCTF1Q8WYP5 2266 aa10.9□□□□□ -0.67
SCN9A-204ENST00000452182 CCDC88CQ9P219 2028 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 ANKRD28O15084 1053 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 SNX3O60493 162 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 TBX19O60806 448 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 CTNSO60931 367 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 JRKO75564 520 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 PPP2R1BP30154 601 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 RPL3P39023 403 aaKnown RBP10.89□□□□□ -0.67
SCN9A-204ENST00000452182 CLDN8P56748 225 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 LSM11P83369 360 aaKnown RBP eCLIP10.89□□□□□ -0.67
SCN9A-204ENST00000452182 RHAGQ02094 409 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 BIKQ13323 160 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 PDE7AQ13946 482 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 ERV3-1Q14264 604 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 PTGR1Q14914 329 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 TMEM198Q66K66 360 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 SLC48A1Q6P1K1 146 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 PIGWQ7Z7B1 504 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 RIMKLAQ8IXN7 391 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 TMEM52Q8NDY8 209 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 DNAJB14Q8TBM8 379 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 C10orf82Q8WW14 230 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 KCNE4Q8WWG9 221 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 STARD8Q92502 1023 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 MTERF3Q96E29 417 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 RILPQ96NA2 401 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 TSSK3Q96PN8 268 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 VN1R1Q9GZP7 353 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 GPN2Q9H9Y4 310 aaPredicted RBP10.89□□□□□ -0.67
SCN9A-204ENST00000452182 SDR39U1Q9NRG7 319 aaPredicted RBP10.89□□□□□ -0.67
SCN9A-204ENST00000452182 SEMA3GQ9NS98 782 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 MRGBPQ9NV56 204 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 HEY2Q9UBP5 337 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 BAIAP2L1Q9UHR4 511 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 CES1P1Q9UKY3 287 aa10.89□□□□□ -0.67
SCN9A-204ENST00000452182 EXO1Q9UQ84 846 aaKnown RBP10.89□□□□□ -0.67
SCN9A-204ENST00000452182 PTRH2Q9Y3E5 179 aaKnown RBP10.89□□□□□ -0.67
SCN9A-204ENST00000452182 IGKV3D-11A0A0A0MRZ8 115 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 IDSB3KWA1 339 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 E9PBE3 544 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 KLHL41O60662 606 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 B4GALT2O60909 372 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 FAM107AO95990 144 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 IGHEP01854 428 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 UMODP07911 640 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 FURINP09958 794 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 PRPS1L1P21108 318 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 F8A1P23610 371 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 FOLR3P41439 243 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 HNRNPFP52597 415 aaKnown RBP10.88□□□□□ -0.67
SCN9A-204ENST00000452182 IGLV3-21P80748 117 aaPredicted RBP10.88□□□□□ -0.67
SCN9A-204ENST00000452182 C2orf80Q0P641 193 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 MINDY4Q4G0A6 757 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 PDCD4Q53EL6 469 aaKnown RBP10.88□□□□□ -0.67
SCN9A-204ENST00000452182 POM121Q96HA1 1249 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 SLC45A3Q96JT2 553 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 ELAC2Q9BQ52 826 aaKnown RBP10.88□□□□□ -0.67
SCN9A-204ENST00000452182 RBCK1Q9BYM8 510 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 ACTL8Q9H568 366 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 REEP4Q9H6H4 257 aa10.88□□□□□ -0.67
SCN9A-204ENST00000452182 SOX17Q9H6I2 414 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms