RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 C17orf105B2RV13 164 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 TP73O15350 636 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 TAPBPO15533 448 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 HS6ST1O60243 411 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SUSD5O60279 629 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CDC40O60508 579 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS41-208ENST00000448833 UGDHO60701 494 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 KERAO60938 352 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SCELO95171 688 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 WISP3O95389 354 aaPredicted RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 LTA4HP09960 611 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 PRF1P14222 555 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 HIST1H1TP22492 207 aaPredicted RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 CPN2P22792 545 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 ATP5A1P25705 553 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 GALNSP34059 522 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PTGER1P34995 402 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PHBP35232 272 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PEX19P40855 299 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 BUD31P41223 144 aaPredicted RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 MSH2P43246 934 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SSR2P43308 183 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 MAGEA4P43358 317 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 RAP1GDS1P52306 607 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PGGT1BP53609 377 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PPIAP62937 165 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 RNF4P78317 190 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SLC10A1Q14973 349 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 FASTKD3Q14CZ7 662 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 SF3B4Q15427 424 aaKnown RBP eCLIP6.57□□□□□ -1.363e-7■■■□□ 15.3
VPS41-208ENST00000448833 OR4D1Q15615 310 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 ZKSCAN8Q15776 578 aaPredicted RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 TUSC1Q2TAM9 212 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CMPK2Q5EBM0 449 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 C10orf62Q5T681 223 aaPredicted RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 DEPDC1Q5TB30 811 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 KHDRBS2Q5VWX1 349 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 SLC22A10Q63ZE4 541 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 OR4C11Q6IEV9 310 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CAPN12Q6ZSI9 719 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 MDGA2Q7Z553 956 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 ISCA2Q86U28 154 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 GPR180Q86V85 440 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CLYBLQ8N0X4 340 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CNPY4Q8N129 248 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 FAM47BQ8NA70 645 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SPATA4Q8NEY3 305 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 OR2M7Q8NG81 312 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 OR7G3Q8NG95 312 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 LILRB4Q8NHJ6 448 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SLC22A8Q8TCC7 542 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PTPMT1Q8WUK0 201 aaPredicted RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 SARAFQ96BY9 339 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SDCCAG3Q96C92 435 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 LRRC46Q96FV0 321 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 LURAP1Q96LR2 239 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 DGAT2Q96PD7 388 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 F2RL3Q96RI0 385 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 RASL10BQ96S79 203 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 WDR83Q9BRX9 315 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 TMEM79Q9BSE2 394 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PRR14Q9BWN1 585 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 MS4A8Q9BY19 250 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 OR8D2Q9GZM6 311 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 ENKD1Q9H0I2 346 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 KCNF1Q9H3M0 494 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 RPF2Q9H7B2 306 aaKnown RBP6.57□□□□□ -1.36
VPS41-208ENST00000448833 CAB39LQ9H9S4 337 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 IL1RL2Q9HB29 575 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 SACM1LQ9NTJ5 587 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CNIH4Q9P003 139 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 IKZF3Q9UKT9 509 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 TMCO1Q9UM00 188 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 PCDHGB3Q9Y5G1 929 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 NINQ8N4C6 2090 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 OTOGQ6ZRI0 2925 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 FREM3P0C091 2139 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 A0A0G2JN53 185 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 IQANK1A0A1B0GTG1 560 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CTAGE15A4D2H0 777 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 OR6C76A6NM76 312 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CXorf49A8MYA2 514 aaPredicted RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 SUPT3HB4E1H0 165 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 WWP2O00308 870 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 PHGDHO43175 533 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 HCN1O60741 890 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 WDR1O75083 606 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 GUCY1B2O75343 617 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SUPT3HO75486 399 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SNRPB2P08579 225 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 PCNAP12004 261 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 GABRA1P14867 456 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CERS1P27544 350 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 SERPINB3P29508 390 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 CASQ1P31415 396 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 STT3AP46977 705 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 HK2P52789 917 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 ALDH18A1P54886 795 aaKnown RBP6.56□□□□□ -1.36
VPS41-208ENST00000448833 PLTPP55058 493 aa6.56□□□□□ -1.36
VPS41-208ENST00000448833 PLIN5Q00G26 463 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms