RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 KCNJ8Q15842 424 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 BTBD16Q32M84 506 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ACTBL2Q562R1 376 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM69Q5SWH9 247 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 FBXL22Q6P050 247 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 OR6N1Q8NGY5 312 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NANOS1Q8WY41 292 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PYCR2Q96C36 320 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 LGALS12Q96DT0 336 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZDHHC12Q96GR4 267 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CNN2Q99439 309 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 GON7Q9BXV9 100 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 DNAJC5Q9H3Z4 198 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C19orf12Q9NSK7 152 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 FCF1Q9Y324 198 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C1orf196B1AJZ1 125 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SCAF4O95104 1147 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MT-ND1P03886 318 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CSN2P05814 226 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CD48P09326 243 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 FGF3P11487 239 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF14P17017 642 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PTBP1P26599 531 aaKnown RBP eCLIP5.86□□□□□ -1.473e-7■■■■□ 20.5
SCN1A-203ENST00000409050 PRKXP51817 358 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RIDAP52758 137 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 S100A10P60903 97 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SNTB2Q13425 540 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SF3A2Q15428 464 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SGCBQ16585 318 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 BLOC1S3Q6QNY0 202 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 C5orf46Q6UWT4 87 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 P4HA3Q7Z4N8 544 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 KIAA0907Q7Z7F0 614 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 IQCHQ86VS3 1027 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 OR52N2Q8NGI0 321 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SGTBQ96EQ0 304 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SUSD2Q9UGT4 822 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SALL4Q9UJQ4 1053 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ACSL6Q9UKU0 697 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 FAM221BA6H8Z2 402 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 LOC730098B7Z3J9 87 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PCDH17O14917 1159 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ANKRD28O15084 1053 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CYB5BO43169 146 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 POP7O75817 140 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PLGP00747 810 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 UBL4AP11441 157 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 GGT1P19440 569 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ALAS2P22557 587 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NR4A2P43354 598 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF81P51508 661 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NCS1P62166 190 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MALLQ13021 153 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CHRNA6Q15825 494 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SCGB2B2Q4G0G5 96 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NANOGP8Q6NSW7 305 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NOXRED1Q6NXP6 359 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM135Q86UB9 458 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 IFNLR1Q8IU57 520 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 KLHDC8BQ8IXV7 354 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF417Q8TAU3 575 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PPP1R13LQ8WUF5 828 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ADAMTS14Q8WXS8 1223 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PHYHIPQ92561 330 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ERLEC1Q96DZ1 483 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 DMRTB1Q96MA1 342 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MGLLQ99685 303 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 DPYSL5Q9BPU6 564 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 POLDIP3Q9BY77 421 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PCDHAC1Q9H158 963 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 IGFLR1Q9H665 355 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MINDY3Q9H8M7 445 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NANOGQ9H9S0 305 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 GNG8Q9UK08 70 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MYBPHLA2RUH7 354 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TRIM64A6NGJ6 449 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 F5H0A9 414 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SDHDO14521 159 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 P2RX6O15547 441 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PPP1R11O60927 126 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM127O75204 238 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SYPP08247 313 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 G6PDP11413 515 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MAOAP21397 527 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CERS1P27544 350 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 GMPRP36959 345 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RPS5P46782 204 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RPS3AP61247 264 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CD83Q01151 205 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NPRL3Q12980 569 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 KCNAB2Q13303 367 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 USF2Q15853 346 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RNASE12Q5GAN4 147 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 KCTD20Q7Z5Y7 419 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TPRA1Q86W33 373 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 BEST4Q8NFU0 473 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 OR7G2Q8NG99 324 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 OR5T2Q8NGG2 359 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SLC22A8Q8TCC7 542 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ING5Q8WYH8 240 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms