RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CNN2Q99439 309 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ELF4Q99607 663 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SAP130Q9H0E3 1048 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 PXMP2Q9NR77 195 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 COLEC10Q9Y6Z7 277 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 LTN1O94822 1766 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 KHNYNO15037 678 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 MATN4O95460 622 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ECI1P42126 302 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF783Q6ZMS7 281 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 BEND4Q6ZU67 534 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 S100A7AQ86SG5 101 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 COX18Q8N8Q8 333 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 METTL2AQ96IZ6 378 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 DZANK1Q9NVP4 752 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 MYO5AQ9Y4I1 1855 aaKnown RBP12.16□□□□□ -0.46
COL6A3-203ENST00000353578 A0A1W2PRB8 838 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 CLDN4O14493 209 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 EPHB6O15197 1021 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 GIPRP48546 466 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 NPNTQ6UXI9 565 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 MBOAT1Q6ZNC8 495 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 GNPDA2Q8TDQ7 276 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SLC35F5Q8WV83 523 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 ERVMER34-1Q9H9K5 563 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 SCN2AQ99250 2005 aa12.16□□□□□ -0.46
COL6A3-203ENST00000353578 IRF2BP1Q8IU81 584 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 OR6V1Q8N148 313 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 KLHDC1Q8N7A1 406 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 CHRNA9Q9UGM1 479 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 E7EQ34 232 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 GOSR2O14653 212 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 CLCN7P51798 805 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 PLAG1Q6DJT9 500 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 VTCN1Q7Z7D3 282 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 KLHDC8BQ8IXV7 354 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 FAM151AQ8WW52 585 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 ATP13A2Q9NQ11 1180 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 TARBP1Q13395 1621 aaKnown RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 JRKO75564 520 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 PTPRRQ15256 657 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 GPR33Q49SQ1 333 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 RNASE10Q5GAN6 216 aaKnown RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 KCT2Q8NC54 265 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 OR56B2PQ8NGI1 322 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 TAS2R30P59541 319 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 LGI2Q8N0V4 545 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 LRRC46Q96FV0 321 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 TMEM169Q96HH4 297 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 LIPT1Q9Y234 373 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 FAM86B1E9PN63 330 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 ONECUT3O60422 494 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 FADS1O60427 444 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 SNNO75324 88 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 DIRAS3O95661 229 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 TAP2Q03519 686 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 SOHLH1Q5JUK2 328 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 FAM86B1Q8N7N1 296 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 BBS10Q8TAM1 723 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 NT5C3BQ969T7 300 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 FOXRED1Q96CU9 486 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 DUSP22Q9NRW4 184 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 A0A0U1RQJ8 604 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF587BE7ETH6 402 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 E2F3O00716 465 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 MAGEB4O15481 346 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 CYTIPO60759 359 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 USP17L7P0C7H9 530 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 RAB5AP20339 215 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 RAB40BQ12829 278 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 PPIGQ13427 754 aaKnown RBP eCLIP12.15□□□□□ -0.46
COL6A3-203ENST00000353578 RAB11BQ15907 218 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 RAP1GAP2Q684P5 730 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 CFAP77Q6ZQR2 320 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 AVL9Q8NBF6 648 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 ZNF599Q96NL3 588 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 LCKP06239 509 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 IRF1P10914 325 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 MTURNQ8N3F0 131 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 OR6T1Q8NGN1 323 aa12.15□□□□□ -0.46
COL6A3-203ENST00000353578 NAV1Q8NEY1 1877 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 MATN3O15232 486 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 GPR137BO60478 399 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 POGLUT1Q8NBL1 392 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 FAM83FQ8NEG4 500 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-203ENST00000353578 NKD1Q969G9 470 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 NTAN1Q96AB6 310 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 HMX1Q9NP08 348 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-203ENST00000353578 FAM96BQ9Y3D0 163 aa12.15□□□□□ -0.47
COL6A3-203ENST00000353578 ZP3P21754 424 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SF1Q15637 639 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 C4orf17Q53FE4 359 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ZMAT1Q5H9K5 638 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ACBD7Q8N6N7 88 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 CDK15Q96Q40 435 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 IL25Q9H293 177 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 KLK4Q9Y5K2 254 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 RNF215Q9Y6U7 377 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 CHD1O14646 1710 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms