RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OR7G3Q8NG95 312 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 ADAD1Q96M93 576 aaKnown RBP14.25□□□□□ -0.13
COL17A1-201ENST00000353479 GFM1Q96RP9 751 aaKnown RBP14.25□□□□□ -0.13
COL17A1-201ENST00000353479 TCF7L1Q9HCS4 588 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 HCN4Q9Y3Q4 1203 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 SNPHO15079 494 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 ALDH3A2P51648 485 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 GBX2P52951 348 aaPredicted RBP14.25□□□□□ -0.13
COL17A1-201ENST00000353479 FOXA1P55317 472 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 CTBSQ01459 385 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 TDGQ13569 410 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 CTSL3PQ5NE16 218 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 SATL1Q86VE3 508 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 TMEFF1Q8IYR6 380 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 LINC01599Q8WXQ3 324 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 ARRDC3Q96B67 414 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 C11orf24Q96F05 449 aaPredicted RBP14.25□□□□□ -0.13
COL17A1-201ENST00000353479 PELOQ9BRX2 385 aaKnown RBP14.25□□□□□ -0.13
COL17A1-201ENST00000353479 SMURF2Q9HAU4 748 aa14.25□□□□□ -0.13
COL17A1-201ENST00000353479 WBP4O75554 376 aaKnown RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 LAMP1P11279 417 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 OGFOD2Q6N063 350 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 OR56A3Q8NH54 315 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 PRR11Q96HE9 360 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 ZSWIM3Q96MP5 696 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 GAL3ST1Q99999 423 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 KAT8Q9H7Z6 458 aaKnown RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 PAK6Q9NQU5 681 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 NLGN3Q9NZ94 848 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 PADI2Q9Y2J8 665 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 MAGP20916 626 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 CTGFP29279 349 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 MC1RQ01726 317 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 TIGD6Q17RP2 521 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 FIGNL1Q6PIW4 674 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 DNM1P34Q6PK57 102 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 ZNF551Q7Z340 670 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 BCL7CQ8WUZ0 217 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 DNAJA3Q96EY1 480 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 HIST1H2AAQ96QV6 131 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 WDR12Q9GZL7 423 aaKnown RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 DKK3Q9UBP4 350 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 CDK5RAP2Q96SN8 1893 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 AKAP8O43823 692 aaKnown RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 CACNG3O60359 315 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 RPLP0P05388 317 aaKnown RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 CD38P28907 300 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 TAS2R38P59533 333 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 GALNT1Q10472 559 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 LCTLQ6UWM7 567 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 C6orf89Q6UWU4 347 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 SLC15A3Q8IY34 581 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 ZNF676Q8N7Q3 588 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 OR6N1Q8NGY5 312 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 NR4A3Q92570 626 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 PDCD10Q9BUL8 212 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 GRHPRQ9UBQ7 328 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 LIPT1Q9Y234 373 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 SOX1O00570 391 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 RPP14O95059 124 aaKnown RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 SNX4O95219 450 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 LDOC1O95751 146 aaPredicted RBP14.24□□□□□ -0.13
COL17A1-201ENST00000353479 CERS1P27544 350 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 SLC35F1Q5T1Q4 408 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 SLC25A24Q6NUK1 477 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 KDM1BQ8NB78 822 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 WFDC5Q8TCV5 224 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 FCGR1BQ92637 280 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 ENTPD2Q9Y5L3 495 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 H0YC42 278 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 HOXA9P31269 272 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 RBBP4Q09028 425 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 LIN54Q6MZP7 749 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 PARM1Q6UWI2 310 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 UBE2J2Q8N2K1 259 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 CHFRQ96EP1 664 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 DOHHQ9BU89 302 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 KCNK12Q9HB15 430 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 KIAA1551Q9HCM1 1747 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 STARD5Q9NSY2 213 aa14.24□□□□□ -0.13
COL17A1-201ENST00000353479 DPPA5A6NC42 116 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 EIF1AXP47813 144 aaKnown RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 PRLHRP49683 370 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 RPS15P62841 145 aaKnown RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 CTC1Q2NKJ3 1217 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 RBM48Q5RL73 367 aaKnown RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 OR52P1PQ8NH57 321 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 COQ8BQ96D53 544 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 PBX4Q9BYU1 374 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 RDH14Q9HBH5 336 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 GPR89AB7ZAQ6 455 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 TACSTD2P09758 323 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 GPR89BP0CG08 455 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 NUDT1P36639 197 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 GRIK2Q13002 908 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 GBX1Q14549 363 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 NFATC4Q14934 902 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 RFLNAQ6ZTI6 216 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms