RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLAMF1Q13291 335 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 PLGLAQ15195 96 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 DCAF12L1Q5VU92 463 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ZC3HC1Q86WB0 502 aaKnown RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 FCAMRQ8WWV6 532 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ZDHHC12Q96GR4 267 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ZIM2Q9NZV7 527 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 TVP23AA6NH52 213 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CD8B2A6NJW9 211 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 H0YJX3 145 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ASGR2P07307 311 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CD8BP10966 210 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ZNF30P17039 623 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 RBMXP38159 391 aaKnown RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 MAP2K4P45985 399 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 OR4D2P58180 307 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 MAF1Q9H063 256 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 FBRSL1Q9HCM7 1045 aaKnown RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 ICKQ9UPZ9 632 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 TSPAN6O43657 245 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 BEST1O76090 585 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 PDYNP01213 254 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 S1PR1P21453 382 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 MLLT6P55198 1093 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 CTC1Q2NKJ3 1217 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 VMACQ2NL98 169 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 FIGNL1Q6PIW4 674 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 SAMD12Q8N8I0 201 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 OSTF1Q92882 214 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 TREX2Q9BQ50 279 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 MTMR11A4FU01 709 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 CAPN5O15484 640 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 HLA-DPB1P04440 258 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 NR2C1P13056 603 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 LIPKQ5VXJ0 399 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 TMEM139Q8IV31 216 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 NUP43Q8NFH3 380 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 C9orf43Q8TAL5 461 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 TLCD1Q96CP7 247 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 DHDHQ9UQ10 334 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 ZNF451Q9Y4E5 1061 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 ZNF705EA8MWA4 302 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 RNGTTO60942 597 aaKnown RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 MAS1P04201 325 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 JUNDP17535 347 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 HNF1BP35680 557 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 BTBD16Q32M84 506 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 MSS51Q4VC12 460 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 UQCC2Q9BRT2 126 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 ABRAXAS2Q15018 415 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 DCDC5Q6ZRR9 648 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 NRROSQ86YC3 692 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 THAP4Q8WY91 577 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 NTAN1Q96AB6 310 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 CCNL2Q96S94 520 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 MAPKAP1Q9BPZ7 522 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 USB1Q9BQ65 265 aaKnown RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 EEF1E1O43324 174 aaKnown RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 COCHO43405 550 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 TPPPO94811 219 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 IL3P08700 152 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 SLC15A1P46059 708 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 PRMT2P55345 433 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 MFSD13AQ14CX5 517 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 TGFBIQ15582 683 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 MFSD8Q8NHS3 518 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.13□□□□□ -0.478e-9■■■■■ 36.2
SDC3-201ENST00000336798 CNIH3Q8TBE1 160 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 EIF5A2Q9GZV4 153 aaKnown RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 SOX17Q9H6I2 414 aaPredicted RBP12.13□□□□□ -0.47
SDC3-201ENST00000336798 RNF6Q9Y252 685 aa12.13□□□□□ -0.47
SDC3-201ENST00000336798 A0A0U1RQF3 1178 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ATE1O95260 518 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 SRPRAP08240 638 aaKnown RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 EPCAMP16422 314 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 PORP16435 677 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 LCN1P31025 176 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 GINS1Q14691 196 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 HYAL4Q2M3T9 481 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 HAGHLQ6PII5 290 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 CARM1Q86X55 608 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 CILP2Q8IUL8 1156 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ELP5Q8TE02 316 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 PRR11Q96HE9 360 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 NKX1-2Q9UD57 310 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 PTGDR2Q9Y5Y4 395 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 B3GALT1Q9Y5Z6 326 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 AQP12BA6NM10 295 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 AK4P27144 223 aaPredicted RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 PIK3CBP42338 1070 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 WDR4P57081 412 aaKnown RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 ZDHHC24Q6UX98 284 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 AQP12AQ8IXF9 295 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 ASCC1Q8N9N2 400 aaKnown RBP12.12□□□□□ -0.47
SDC3-201ENST00000336798 SMOQ99835 787 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 SMOC2Q9H3U7 446 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 SCP2D1Q9UJQ7 156 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 FLRT2O43155 660 aa12.12□□□□□ -0.47
SDC3-201ENST00000336798 TOXO94900 526 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms