RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 ETV5P41161 510 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 RABIFP47224 123 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 GRB7Q14451 532 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 ATXN7L3Q14CW9 347 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-201ENST00000303354 MLC1Q15049 377 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 TMCO6Q96DC7 493 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 NXPE2Q96DL1 559 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF599Q96NL3 588 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 CD180Q99467 661 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 CCDC28BQ9BUN5 200 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 EFCAB11Q9BUY7 163 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 PBX4Q9BYU1 374 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 RNF38Q9H0F5 515 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 IL1RAPQ9NPH3 570 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 EEF1E1-BLOC1S5C9J1V9 151 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 EEF1E1O43324 174 aaKnown RBP7.48□□□□□ -1.21
SCN9A-201ENST00000303354 HTR1AP08908 422 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 PRPS1L1P21108 318 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 LHCGRP22888 699 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 FNTBP49356 437 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 CCR3P51677 355 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 MORN1Q5T089 497 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 RNF220Q5VTB9 566 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 QSOX2Q6ZRP7 698 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 LRRC70Q7Z2Q7 622 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 CILP2Q8IUL8 1156 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 FOXJ1Q92949 421 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 LRCH3Q96II8 777 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 TRMOQ9BU70 441 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 VSX1Q9NZR4 365 aaPredicted RBP7.48□□□□□ -1.21
SCN9A-201ENST00000303354 IGHV3-64DA0A0J9YX35 117 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 LINC01565O15544 149 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 SEMA3DO95025 777 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 FARS2O95363 451 aaKnown RBP7.48□□□□□ -1.21
SCN9A-201ENST00000303354 C1GALT1C1LP0DN25 315 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 SRCP12931 536 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 BPIP17213 487 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 TGFBR2P37173 567 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 KANK2Q63ZY3 851 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 TBC1D15Q8TC07 691 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 C10orf82Q8WW14 230 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 MRGPRX2Q96LB1 330 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 RBP7Q96R05 134 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 NTPCRQ9BSD7 190 aaKnown RBP7.48□□□□□ -1.21
SCN9A-201ENST00000303354 RMI1Q9H9A7 625 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 ITM2CQ9NQX7 267 aa7.48□□□□□ -1.21
SCN9A-201ENST00000303354 PRPF19Q9UMS4 504 aaKnown RBP7.48□□□□□ -1.21
SCN9A-201ENST00000303354 TEX13DA0A0J9YY54 714 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TP53I11O14683 189 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ERVK-8P63133 956 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 MRPL49Q13405 166 aaKnown RBP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF619Q8N2I2 560 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PHOX2BQ99453 314 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 CCL26Q9Y258 94 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 NPHS1O60500 1241 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TUBB3Q13509 450 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TPRG1LQ5T0D9 272 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ADNP2Q6IQ32 1131 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 RASSF5Q8WWW0 418 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ATG5Q9H1Y0 275 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ATXN10Q9UBB4 475 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PRORSD1PA6NEY8 169 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ABLIM1O14639 778 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 MAS1P04201 325 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 HNRNPA1P09651 372 aaKnown RBP eCLIP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 SLC6A4P31645 630 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 AQP4P55087 323 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 GPX6P59796 221 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 HSF5Q4G112 596 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PGAM4Q8N0Y7 254 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ACTL8Q9H568 366 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 MAN2C1Q9NTJ4 1040 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ADAMDEC1O15204 470 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 MPPED1O15442 326 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ABRAXAS2Q15018 415 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 OR7A5Q15622 319 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 VTCN1Q7Z7D3 282 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 FITM2Q8N6M3 262 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 SLC45A3Q96JT2 553 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TPT1P8Q9HAU6 139 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 NANSQ9NR45 359 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PNPLA3Q9NST1 481 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PCP4L1A6NKN8 68 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 SSX5O60225 188 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 SLC2A5P22732 501 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 KCNAB2Q13303 367 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ZMYND11Q15326 602 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 OGFRL1Q5TC84 451 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PIAS4Q8N2W9 510 aaPredicted RBP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TRAM1L1Q8N609 369 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 PQLC3Q8N755 202 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 OR52E2Q8NGJ4 325 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 GATAD2BQ8WXI9 593 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TMBIM1Q969X1 311 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 SLC6A7Q99884 636 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 TRPV4Q9HBA0 871 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 B4GALT7Q9UBV7 327 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 ARHGEF28Q8N1W1 1705 aaKnown RBP7.47□□□□□ -1.21
SCN9A-201ENST00000303354 MAFKO60675 156 aa7.47□□□□□ -1.21
SCN9A-201ENST00000303354 CDRT1O95170 752 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms