RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CLEC4AQ9UMR7 237 aa13.86□□□□□ -0.19
VPS35-210ENST00000568784 MYO9BQ13459 2157 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 FAM240BA0A1B0GVZ2 78 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 SGTAO43765 313 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 PLOD3O60568 738 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 IL7P13232 177 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 SLC16A1P53985 500 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 PIN1Q13526 163 aaPredicted RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 LIPJQ5W064 366 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 CADM2Q8N3J6 435 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 IL17RDQ8NFM7 739 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 C9orf43Q8TAL5 461 aaPredicted RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 RAET1EQ8TD07 263 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 AP2M1Q96CW1 435 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 CASD1Q96PB1 797 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 ZIC5Q96T25 663 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 UCK2Q9BZX2 261 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 SNX7Q9UNH6 387 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 LAMA2P24043 3122 aaKnown RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 ARID1BQ8NFD5 2236 aaPredicted RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 SCN2BO60939 215 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 ERAL1O75616 437 aaKnown RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 NR2F1P10589 423 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 IL1RNP18510 177 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 MLLT1Q03111 559 aaPredicted RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.85□□□□□ -0.19
VPS35-210ENST00000568784 MRPL28Q13084 256 aaKnown RBP13.85□□□□□ -0.19
VPS35-210ENST00000568784 TTC23LQ6PF05 361 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 OR2B2Q9GZK3 357 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 ITM2BQ9Y287 266 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 PLD2O14939 933 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 ARSIQ5FYB1 569 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 OR2G6Q5TZ20 316 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 HSD11B1LQ7Z5J1 315 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 GALNT13Q8IUC8 556 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 CHCHD4Q8N4Q1 142 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 SPG21Q9NZD8 308 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 ASF1AQ9Y294 204 aa13.85□□□□□ -0.19
VPS35-210ENST00000568784 CNTRLQ7Z7A1 2325 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SOCS5O75159 536 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 C1SP09871 688 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SELPP16109 830 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 MYL9P24844 172 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 HTR3AP46098 478 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 TBPL1P62380 186 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 POLR2LP62875 67 aaKnown RBP13.84□□□□□ -0.19
VPS35-210ENST00000568784 LINC00299Q6ZSB3 139 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 LAPTM4BQ86VI4 370 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 GLCCI1Q86VQ1 547 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.84□□□□□ -0.19
VPS35-210ENST00000568784 GHDCQ8N2G8 530 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 FBLIM1Q8WUP2 373 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 TM9SF2Q99805 663 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 CLSTN3Q9BQT9 956 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 RACGAP1Q9H0H5 632 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 GULP1Q9UBP9 304 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 MOSPD1Q9UJG1 213 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 LZTS3O60299 673 aaPredicted RBP13.84□□□□□ -0.19
VPS35-210ENST00000568784 PRMT3O60678 531 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 ATG13O75143 517 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 NR2F6P10588 404 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 CSTF2P33240 577 aaKnown RBP eCLIP13.84□□□□□ -0.19
VPS35-210ENST00000568784 MTAPQ13126 283 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SYT14Q8NB59 555 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 GATAD2BQ8WXI9 593 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 ARMC5Q96C12 935 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 ZNF334Q9HCZ1 680 aaPredicted RBP13.84□□□□□ -0.19
VPS35-210ENST00000568784 CCDC59Q9P031 241 aaKnown RBP13.84□□□□□ -0.19
VPS35-210ENST00000568784 ENOPH1Q9UHY7 261 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 CMAHPQ9Y471 501 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 ENPP4Q9Y6X5 453 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 MYOFQ9NZM1 2061 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 KCNE1BA0A087WTH5 132 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 GLOD5A6NK44 160 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 UGT2B17O75795 530 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 LRG1P02750 347 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SDC2P34741 201 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SLC6A12P48065 614 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 FKBP1BP68106 108 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 HEPACAMQ14CZ8 416 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SPIN4Q56A73 249 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 LHFPL3Q86UP9 236 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 OXR1Q8N573 874 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 TMEM80Q96HE8 168 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 MAPKAP1Q9BPZ7 522 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 FNDC11Q9BVV2 318 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 TTLL2Q9BWV7 592 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 SLC22A4Q9H015 551 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 OR2AG1Q9H205 316 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 KCNK12Q9HB15 430 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 EQTNQ9NQ60 294 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 IL20RAQ9UHF4 553 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 ATP6V1HQ9UI12 483 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 TANC1Q9C0D5 1861 aa13.84□□□□□ -0.19
VPS35-210ENST00000568784 POP4O95707 220 aaKnown RBP13.83□□□□□ -0.19
VPS35-210ENST00000568784 ELFN1P0C7U0 828 aa13.83□□□□□ -0.19
VPS35-210ENST00000568784 MPPE1Q53F39 396 aa13.83□□□□□ -0.19
VPS35-210ENST00000568784 TMED9Q9BVK6 235 aa13.83□□□□□ -0.19
VPS35-210ENST00000568784 GABARAPL3Q9BY60 117 aa13.83□□□□□ -0.19
VPS35-210ENST00000568784 MRPL9Q9BYD2 267 aaKnown RBP13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms