RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RRADP55042 308 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 RAB38P57729 211 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 ATP1A4Q13733 1029 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 TCHHL1Q5QJ38 904 aaPredicted RBP16.24■□□□□ 0.19
CLN3-217ENST00000565354 MRGPREQ86SM8 312 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 CUZD1Q86UP6 607 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 LAPTM4BQ86VI4 370 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 MGARPQ8TDB4 240 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 ADAMTS17Q8TE56 1095 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 TLCD1Q96CP7 247 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 FER1L6-AS2Q96M78 137 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 KCNA7Q96RP8 456 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 SLC25A23Q9BV35 468 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 BRF2Q9HAW0 419 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 MLXIPLQ9NP71 852 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 PRDM7Q9NQW5 492 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 FARSBQ9NSD9 589 aaKnown RBP16.24■□□□□ 0.19
CLN3-217ENST00000565354 C19orf25Q9UFG5 118 aaPredicted RBP16.24■□□□□ 0.19
CLN3-217ENST00000565354 PPT2Q9UMR5 302 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 FIS1Q9Y3D6 152 aa16.24■□□□□ 0.19
CLN3-217ENST00000565354 PCDHGA9Q9Y5G4 932 aaKnown RBP16.24■□□□□ 0.19
CLN3-217ENST00000565354 SEC16AO15027 2179 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 CCDC88CQ9P219 2028 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ARHGAP10A1A4S6 786 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 PLPP1O14494 284 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 UBFD1O14562 309 aaKnown RBP16.23■□□□□ 0.19
CLN3-217ENST00000565354 BIRC5O15392 142 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 DNAJB6O75190 326 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ALOX12BO75342 701 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 SEMA3DO95025 777 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 CHEK2O96017 543 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 C8orf89P0DMQ9 161 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 HSD3B1P14060 373 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ACPPP15309 386 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 HSD3B2P26439 372 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 SERPINB5P36952 375 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ARFIP1P53367 373 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 CSTF3Q12996 717 aaKnown RBP16.23■□□□□ 0.19
CLN3-217ENST00000565354 RUNX2Q13950 521 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 INPP5JQ15735 1006 aaPredicted RBP16.23■□□□□ 0.19
CLN3-217ENST00000565354 CHI3L2Q15782 390 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 IMPG1Q17R60 797 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 EIF2S3LQ2VIR3 472 aaKnown RBP16.23■□□□□ 0.19
CLN3-217ENST00000565354 TUBB8Q3ZCM7 444 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 CYP20A1Q6UW02 462 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 PAGE2Q7Z2X7 111 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 PPP1R32Q7Z5V6 425 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 UBE3DQ7Z6J8 389 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 NUDT13Q86X67 352 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 TMEM151BQ8IW70 566 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ACOT4Q8N9L9 421 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 NACC2Q96BF6 587 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ARL8AQ96BM9 186 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 ATP6V1G3Q96LB4 118 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 HBEGFQ99075 208 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 SORBS1Q9BX66 1292 aaKnown RBP16.23■□□□□ 0.19
CLN3-217ENST00000565354 VN1R1Q9GZP7 353 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 P4HTMQ9NXG6 502 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 FBXW2Q9UKT8 454 aa16.23■□□□□ 0.19
CLN3-217ENST00000565354 C2CD3Q4AC94 2353 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 TCP11X1B4DZS4 312 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 CLDN4O14493 209 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 PCDH17O14917 1159 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 ETHE1O95571 254 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 CLDN1O95832 211 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 CYC1P08574 325 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 UROSP10746 265 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 CPN2P22792 545 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 HTR6P50406 440 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 LIM2P55344 173 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 ZNF33BQ06732 778 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 SLAMF1Q13291 335 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 MRPL49Q13405 166 aaKnown RBP16.22■□□□□ 0.19
CLN3-217ENST00000565354 CPZQ66K79 652 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 SCIMPQ6UWF3 145 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 ZNF793Q6ZN11 406 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 MED25Q71SY5 747 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 TICAM1Q8IUC6 712 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 HOMEZQ8IX15 550 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 GBP7Q8N8V2 638 aaPredicted RBP16.22■□□□□ 0.19
CLN3-217ENST00000565354 TMEM102Q8N9M5 508 aaPredicted RBP16.22■□□□□ 0.19
CLN3-217ENST00000565354 FAM47BQ8NA70 645 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 LYRM4Q9HD34 91 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 DAPP1Q9UN19 280 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 HS3ST3B1Q9Y662 390 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 POLQO75417 2590 aa16.22■□□□□ 0.19
CLN3-217ENST00000565354 WIPF3A6NGB9 483 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 FAM227AF5H4B4 570 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 SOCS6O14544 535 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 AZIN1O14977 448 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 PRMT3O60678 531 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 HSPA4LO95757 839 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 SERPINE1P05121 402 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 CHRNGP07510 517 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 SERPINB3P29508 390 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 FOXA1P55317 472 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 EEF1A2Q05639 463 aaKnown RBP16.21■□□□□ 0.19
CLN3-217ENST00000565354 CHAF1BQ13112 559 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 PRR30Q53SZ7 412 aaPredicted RBP16.21■□□□□ 0.19
CLN3-217ENST00000565354 ARL13AQ5H913 290 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms