RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TCRBV5S1A1TA0A578 114 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 HELTA6NFD8 242 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TUBAL3A6NHL2 446 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 LRRC53A6NM62 1247 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR2AT4A6NND4 320 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 E9PAM4 449 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 M0QZK8 103 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RAB27BO00194 218 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SLC22A2O15244 555 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TGFB1I1O43294 461 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 AQP9O43315 295 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 EIF1BO60739 113 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 CCDC22O60826 627 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TNFRSF6BO95407 300 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NTSR2O95665 410 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 MMP3P08254 477 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ABHD2P08910 425 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TMEM191BP0C7N4 346 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR2T7P0C7T2 308 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OCM2P0CE71 109 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OCMP0CE72 109 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 COX4I1P13073 169 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 CCL2P13500 99 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NQO2P16083 231 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ZNF8P17098 575 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 TPH1P17752 444 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 EPORP19235 508 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TUBG1P23258 451 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 DTYMKP23919 212 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 EPHA8P29322 1005 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 HOXA13P31271 388 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 OTX2P32243 289 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 EIF1P41567 113 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 TMPOP42166 694 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 SNU13P55769 128 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR2B6P58173 313 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 CXCR4P61073 352 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NAA20P61599 178 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ARF6P62330 175 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 PSG6Q00889 435 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 DSC1Q08554 894 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SPOCK1Q08629 439 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 PPIGQ13427 754 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS35-205ENST00000563984 MADCAM1Q13477 382 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 VEZF1Q14119 521 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 POU6F1Q14863 301 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TOMM34Q15785 309 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 DUSP7Q16829 419 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 LIN52Q52LA3 116 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TEX44Q53QW1 395 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ACTBL2Q562R1 376 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RABGAP1LQ5R372 815 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 CCNYL2Q5T2Q4 361 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 C20orf194Q5TEA3 1177 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 HACD4Q5VWC8 232 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 JADE1Q6IE81 842 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR6B2Q6IFH4 312 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 MRNIPQ6NTE8 343 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 KLHL17Q6TDP4 642 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SLC16A12Q6ZSM3 486 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 PGAP1Q75T13 922 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SLC26A9Q7LBE3 791 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ANKRD46Q86W74 232 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SFR1Q86XK3 245 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TDRPQ86YL5 185 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RASGRP3Q8IV61 690 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 LINC00346Q8IVM7 164 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SLC35F3Q8IY50 421 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 WDTC1Q8N5D0 677 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 CCDC185Q8N715 623 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 FRMD1Q8N878 549 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NECAB1Q8N987 351 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR2D3Q8NGH3 330 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR52E1Q8NGJ3 308 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR5D18Q8NGL1 313 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 OR10J5Q8NHC4 309 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ELP5Q8TE02 316 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 GIPC3Q8TF64 312 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SCARB1Q8WTV0 552 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NAT14Q8WUY8 206 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 KAT2AQ92830 837 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RAB1CQ92928 201 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TCEAL3Q969E4 200 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 RPL36ALQ969Q0 106 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 MCUR1Q96AQ8 359 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 HAVCR1Q96D42 359 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ECHDC3Q96DC8 303 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 NXPE2Q96DL1 559 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 SGTBQ96EQ0 304 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ZBTB45Q96K62 511 aaPredicted RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 SPATA13Q96N96 652 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 QKIQ96PU8 341 aaKnown RBP eCLIP4.85□□□□□ -1.636e-6■■■■□ 20.5
VPS35-205ENST00000563984 CHP1Q99653 195 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 MAPKAP1Q9BPZ7 522 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 TUBB6Q9BUF5 446 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 ZNF416Q9BWM5 594 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 QTRT1Q9BXR0 403 aaKnown RBP4.85□□□□□ -1.63
VPS35-205ENST00000563984 RAB17Q9H0T7 212 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 FBXO44Q9H4M3 255 aa4.85□□□□□ -1.63
VPS35-205ENST00000563984 AUNIPQ9H7T9 357 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms