RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MKL2Q9ULH7 1088 aa9.21□□□□□ -0.94
CLK3-208ENST00000562626 DLGAP4Q9Y2H0 992 aa9.21□□□□□ -0.94
CLK3-208ENST00000562626 RAP2CQ9Y3L5 183 aa9.21□□□□□ -0.94
CLK3-208ENST00000562626 POLR3HQ9Y535 204 aaPredicted RBP9.21□□□□□ -0.94
CLK3-208ENST00000562626 IGKV3D-11A0A0A0MRZ8 115 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 GLOD5A6NK44 160 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 ZNF891A8MT65 544 aaPredicted RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 ZNF195O14628 629 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 KLF11O14901 512 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 LSM1O15116 133 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 PGRMC2O15173 223 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 PROM1O43490 865 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 ATP8B1O43520 1251 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 LDB3O75112 727 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 DNAJB5O75953 348 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 FAM58BPP0C7Q3 252 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 RNH1P13489 461 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 PRPH2P23942 346 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 TIA1P31483 386 aaKnown RBP eCLIP9.2□□□□□ -0.94
CLK3-208ENST00000562626 RPL14P50914 215 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 HK2P52789 917 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 EMP2P54851 167 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 TMPRSS3P57727 454 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 MC1RQ01726 317 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 TNFRSF17Q02223 184 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 DUSP2Q05923 314 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 TGM3Q08188 693 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 MINDY4Q4G0A6 757 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 RFTN2Q52LD8 501 aaPredicted RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 SOWAHCQ53LP3 525 aaPredicted RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 C10orf62Q5T681 223 aaPredicted RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 MFSD4BQ5TF39 518 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 VWA5B1Q5TIE3 1220 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 FAM180BQ6P0A1 224 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 TMEM205Q6UW68 189 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 DGAT2L6Q6ZPD8 337 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 RNF165Q6ZSG1 346 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 SCUBE1Q8IWY4 988 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 OR4N5Q8IXE1 308 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 DDIASQ8IXT1 998 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 EFCAB3Q8N7B9 438 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 DOK4Q8TEW6 326 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 SNRNP27Q8WVK2 155 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 CKAP2Q8WWK9 683 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 ANKRD9Q96BM1 317 aaPredicted RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 TM4SF18Q96CE8 201 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 WDR77Q9BQA1 342 aaPredicted RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 TRIM55Q9BYV6 548 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 EML4Q9HC35 981 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 LYRM4Q9HD34 91 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 INTS9Q9NV88 658 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 EXO1Q9UQ84 846 aaKnown RBP9.2□□□□□ -0.94
CLK3-208ENST00000562626 PADI2Q9Y2J8 665 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 NCKAP5O14513 1909 aa9.2□□□□□ -0.94
CLK3-208ENST00000562626 ARGFXA6NJG6 315 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 NPIPB8E9PQR5 432 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 SDHDO14521 159 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 PCDH7O60245 1069 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 FGF17O60258 216 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 RSL1D1O76021 490 aaKnown RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 HEXBP07686 556 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 KITP10721 976 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 COX6A1P12074 109 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 CPN2P22792 545 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 MMP11P24347 488 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 PTGER1P34995 402 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 ARFIP1P53367 373 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 RPL38P63173 70 aaKnown RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 GUCY1A3Q02108 690 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 ZNF33BQ06732 778 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 Q0VFX4 171 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 SSPNQ14714 243 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 PCOLCEQ15113 449 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 NR6A1Q15406 480 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 DEFB109BQ30KR1 87 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 ZNF750Q32MQ0 723 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 TUBB8Q3ZCM7 444 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 GALNTL6Q49A17 601 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 SPDYAQ5MJ70 313 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 CCNYL2Q5T2Q4 361 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 BROXQ5VW32 411 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 CYP20A1Q6UW02 462 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 PCSK4Q6UW60 755 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 FAM47EQ6ZV65 393 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 MED25Q71SY5 747 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 ANKRD37Q7Z713 158 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 GPR180Q86V85 440 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 WDR75Q8IWA0 830 aaKnown RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 GBP7Q8N8V2 638 aaPredicted RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 SRFBP1Q8NEF9 429 aaKnown RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 OR11G2Q8NGC1 345 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.19□□□□□ -0.94
CLK3-208ENST00000562626 RAB3IL1Q8TBN0 382 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 C16orf78Q8WTQ4 265 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 SREK1Q8WXA9 508 aaKnown RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 EGLN2Q96KS0 407 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 FCRL1Q96LA6 429 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 OR1F2PQ96R84 312 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 C1orf50Q9BV19 199 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 NUF2Q9BZD4 464 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms