RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 WDR41Q9HAD4 459 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 SIRT5Q9NXA8 310 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 NKIRAS1Q9NYS0 192 aa12.22□□□□□ -0.45
NEDD8-208ENST00000560427 TMPRSS11DO60235 418 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 EEDO75530 441 aaKnown RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 RSL1D1O76021 490 aaKnown RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 SERPINA7P05543 415 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 FAM58BPP0C7Q3 252 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ITGA3P26006 1051 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 HTR6P50406 440 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 FOXA1P55317 472 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 EEF1A2Q05639 463 aaKnown RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 CHAF1BQ13112 559 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 SLC13A2Q13183 592 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 SERTAD2Q14140 314 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 MPP2Q14168 576 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 MYBPC3Q14896 1274 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 CCNYL2Q5T2Q4 361 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 VWA5B1Q5TIE3 1220 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 HHATQ5VTY9 493 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 KANK2Q63ZY3 851 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 PLAG1Q6DJT9 500 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 FAAH2Q6GMR7 532 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 TCTN3Q6NUS6 607 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 JMJD6Q6NYC1 403 aaPredicted RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 GALNT18Q6P9A2 607 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ZCCHC23Q6ZST2 131 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 LANCL3Q6ZV70 420 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 KBTBD2Q8IY47 623 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 CLYBLQ8N0X4 340 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 SHISA5Q8N114 240 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 EFCAB3Q8N7B9 438 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 C9orf43Q8TAL5 461 aaPredicted RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 RAB3IL1Q8TBN0 382 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ABHD17AQ96GS6 310 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ATP6V1G3Q96LB4 118 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 IMMP1LQ96LU5 166 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 CSF3RQ99062 836 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 HBEGFQ99075 208 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 CCT7Q99832 543 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 MAPKAP1Q9BPZ7 522 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 SLC25A23Q9BV35 468 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 SORBS1Q9BX66 1292 aaKnown RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 RPF2Q9H7B2 306 aaKnown RBP12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ZNF160Q9HCG1 818 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 MLXIPLQ9NP71 852 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 GPR83Q9NYM4 423 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 MCM8Q9UJA3 840 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 FBXW2Q9UKT8 454 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ASB4Q9Y574 426 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 TIMM22Q9Y584 194 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 ZFYVE26Q68DK2 2539 aa12.21□□□□□ -0.45
NEDD8-208ENST00000560427 PCSK5Q92824 1860 aa12.21□□□□□ -0.46
NEDD8-208ENST00000560427 HMGB1P1B2RPK0 211 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 FAM227AF5H4B4 570 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 SLC28A1O00337 649 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 PROM1O43490 865 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 RGS14O43566 566 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 DNAJB5O75953 348 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 KLK1P06870 262 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 CHRNGP07510 517 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 NR2F6P10588 404 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 MAOAP21397 527 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 PRPH2P23942 346 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 TPP2P29144 1249 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 CCL11P51671 97 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 MAPK12P53778 367 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 OR4D2P58180 307 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 BTG2P78543 158 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 ACSM2AQ08AH3 577 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 CHI3L2Q15782 390 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 IMPG1Q17R60 797 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 SFT2D3Q587I9 215 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 ACSM2BQ68CK6 577 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 OR52E8Q6IFG1 317 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 PAPD4Q6PIY7 484 aaKnown RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 TRIM42Q8IWZ5 723 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 ANKRD42Q8N9B4 389 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 EXD3Q8N9H8 876 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 FDCSPQ8NFU4 85 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 FAM76AQ8TAV0 307 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 CHTF18Q8WVB6 975 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 TANKQ92844 425 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 TSLPQ969D9 159 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 C11orf24Q96F05 449 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 SMAD5Q99717 465 aaKnown RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 WDR77Q9BQA1 342 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 PELOQ9BRX2 385 aaKnown RBP12.2□□□□□ -0.46
NEDD8-208ENST00000560427 LHPPQ9H008 270 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 SLC25A18Q9H1K4 315 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 PFDN4Q9NQP4 134 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 C5AR2Q9P296 337 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 TRAF6Q9Y4K3 522 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 ATG4BQ9Y4P1 393 aa12.2□□□□□ -0.46
NEDD8-208ENST00000560427 LOC400499M0QZD8 3231 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 SAGE2PA6NJ88 616 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 HSPA4LO95757 839 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 PGDP52209 483 aa12.19□□□□□ -0.46
NEDD8-208ENST00000560427 HNRNPFP52597 415 aaKnown RBP12.19□□□□□ -0.46
NEDD8-208ENST00000560427 HNRNPH2P55795 449 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms