RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 COL4A4P53420 1690 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 FABP12A6NFH5 140 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 ANKDD1BA6NHY2 528 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 ZNF821O75541 412 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 OR56A5P0C7T3 313 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 SLC6A12P48065 614 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 HTRA3P83110 453 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 MLLT1Q03111 559 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 RUNX1T1Q06455 604 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 MAP4K2Q12851 820 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 PUM1Q14671 1186 aaKnown RBP eCLIP11.78□□□□□ -0.52
LDLR-205ENST00000557933 CDK10Q15131 360 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 P2RY14Q15391 338 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 CDKN3Q16667 212 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 CLEC12AQ5QGZ9 265 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 ATAT1Q5SQI0 421 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 TYW3Q6IPR3 259 aaKnown RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 ARMCX6Q7L4S7 300 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 TIGD4Q8IY51 512 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 GATAD2BQ8WXI9 593 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 SCLYQ96I15 445 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 SLC12A9Q9BXP2 914 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 OR2B2Q9GZK3 357 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 RACGAP1Q9H0H5 632 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 ZDHHC3Q9NYG2 299 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 NLKQ9UBE8 527 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 MKLN1Q9UL63 735 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 ITM2BQ9Y287 266 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 POFUT2Q9Y2G5 429 aa11.78□□□□□ -0.52
LDLR-205ENST00000557933 SPIN1Q9Y657 262 aaPredicted RBP11.78□□□□□ -0.52
LDLR-205ENST00000557933 A0A0G2JMP0 313 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 HYAL3O43820 417 aaPredicted RBP11.77□□□□□ -0.52
LDLR-205ENST00000557933 SOX18P35713 384 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 HSPB3Q12988 150 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 SPHARQ15513 63 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 CEP78Q5JTW2 689 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 PLAG1Q6DJT9 500 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 FRMPD2BQ6IN97 320 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 ERICH5Q6P6B1 374 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 USP30Q70CQ3 517 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 DHRS1Q96LJ7 313 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 SLC6A18Q96N87 628 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 YME1L1Q96TA2 773 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 MOV10Q9HCE1 1003 aaKnown RBP11.77□□□□□ -0.52
LDLR-205ENST00000557933 CCDC177Q9NQR7 707 aaPredicted RBP11.77□□□□□ -0.52
LDLR-205ENST00000557933 TMEM45AQ9NWC5 275 aa11.77□□□□□ -0.52
LDLR-205ENST00000557933 CCDC182A6NF36 153 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 OR6C75A6NL08 312 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 TLR4O00206 839 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 PITPNM1O00562 1244 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 PRRG1O14668 218 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 SYN3O14994 580 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 FRS3O43559 492 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 PSIP1O75475 530 aaKnown RBP11.77□□□□□ -0.53
LDLR-205ENST00000557933 CSF3P09919 207 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 ZNF8P17098 575 aaPredicted RBP11.77□□□□□ -0.53
LDLR-205ENST00000557933 CYP2A7P20853 494 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 CD9P21926 228 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 RPS3P23396 243 aaKnown RBP eCLIP11.77□□□□□ -0.531e-7■■□□□ 12
LDLR-205ENST00000557933 GPC1P35052 558 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 KIR2DL3P43628 341 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 MAN2A2P49641 1150 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 CRISP1P54107 249 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 TARDBPQ13148 414 aaKnown RBP eCLIP11.77□□□□□ -0.53
LDLR-205ENST00000557933 C5orf22Q49AR2 442 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 PDZK1Q5T2W1 519 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 GCNT6Q5T4J0 391 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 FBXO46Q6PJ61 603 aaPredicted RBP11.77□□□□□ -0.53
LDLR-205ENST00000557933 TECPR1Q7Z6L1 1165 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 VPS37AQ8NEZ2 397 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 QRSL1Q9H0R6 528 aaKnown RBP11.77□□□□□ -0.53
LDLR-205ENST00000557933 CDCP1Q9H5V8 836 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 CLN6Q9NWW5 311 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 FAM120CQ9NX05 1096 aaKnown RBP11.77□□□□□ -0.53
LDLR-205ENST00000557933 ASIC5Q9NY37 505 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 CLEC4AQ9UMR7 237 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 PCDHB7Q9Y5E2 793 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 MAU2Q9Y6X3 613 aa11.77□□□□□ -0.53
LDLR-205ENST00000557933 LOC102723532A0A0G2JNH3 316 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ZSCAN5BA6NJL1 495 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 CAPN5O15484 640 aaPredicted RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 GALTP07902 379 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 MYL9P24844 172 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 HYAL2Q12891 473 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 LRRC32Q14392 662 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 FLYWCH1Q4VC44 716 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SYTL3Q4VX76 610 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 LRRC70Q7Z2Q7 622 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ANKRD33Q7Z3H0 272 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 COMMD6Q7Z4G1 85 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 CACUL1Q86Y37 369 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 YIPF7Q8N8F6 280 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 OR8J2Q8NGG1 315 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 OR4C15Q8NGM1 316 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 WDR20Q8TBZ3 569 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 UBTD2Q8WUN7 234 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 TOX2Q96NM4 488 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 NXF2Q9GZY0 626 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 CHST8Q9H2A9 424 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 MVB12BQ9H7P6 319 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms