RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 LACTB2Q53H82 288 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 RAB6CQ53S08 254 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 ARMC4Q5T2S8 1044 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 STXBP5Q5T5C0 1151 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 BRAT1Q6PJG6 821 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 CENPVQ7Z7K6 275 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 BIVMQ86UB2 503 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 PHC2Q8IXK0 858 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 PM20D2Q8IYS1 436 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 GCSAMQ8N6F7 178 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 EID2Q8N6I1 236 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 CHDHQ8NE62 594 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 OR5R1Q8NH85 324 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 GOT1L1Q8NHS2 421 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 TAF15Q92804 592 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-235ENST00000532339 ATP6V1E2Q96A05 226 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 SPACA9Q96E40 222 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 ALG14Q96F25 216 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RAB3IPQ96QF0 476 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 F2RL3Q96RI0 385 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 MTERF1Q99551 399 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 OLFM1Q99784 485 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 CMKLR1Q99788 373 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 NUP85Q9BW27 656 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RAB6CQ9H0N0 254 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RSPH9Q9H1X1 276 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 NOL11Q9H8H0 719 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 ECT2Q9H8V3 914 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 GRPEL1Q9HAV7 217 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 CHMP1AQ9HD42 196 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 MBNL1Q9NR56 388 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 ECHDC1Q9NTX5 307 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 PRMT7Q9NVM4 692 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 CHCHD3Q9NX63 227 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 SEPT10Q9P0V9 454 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 GTF3C4Q9UKN8 822 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RPH3AQ9Y2J0 694 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 MMP24Q9Y5R2 645 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 LIPGQ9Y5X9 500 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 A0A1W2PNU3 283 aaPredicted RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 ARL5CA6NH57 179 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 PMS2P5A8MQ11 134 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 TCP11X1B4DZS4 312 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 CCDC188H7C350 402 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 TMEM189-UBE2V1I3L0A0 370 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 MAGEB2O15479 319 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 YKT6O15498 198 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 NMT2O60551 498 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 JAK2O60674 1132 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 PRAMEF11O60813 436 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 TNFSF15O95150 251 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 LINGO3P0C6S8 592 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 POLR2MP0CAP2 368 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 THEGLP0DJG4 465 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 LIPCP11150 499 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 TOP1P11387 765 aaKnown RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 VDRP11473 427 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 FDPSP14324 419 aaKnown RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 PAX1P15863 534 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 PFKFB1P16118 471 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 ERCC2P18074 760 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 TNNT3P45378 269 aaPredicted RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 NR0B1P51843 470 aaKnown RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 TWF1Q12792 350 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 GAGE5Q13069 117 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 GAGE6Q13070 117 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 UBE2V1Q13404 147 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 GTF2H2Q13888 395 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 MELKQ14680 651 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 ISXQ2M1V0 245 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 C14orf28Q4W4Y0 310 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 C14orf177Q52M58 125 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 KLHL26Q53HC5 615 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 SLC8B1Q6J4K2 584 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 CAVIN1Q6NZI2 390 aaKnown RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 GTF2H2CQ6P1K8 395 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 ASB18Q6ZVZ8 466 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 ERN2Q76MJ5 926 aaKnown RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 METTL23Q86XA0 190 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 EMC1Q8N766 993 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 CAMKVQ8NCB2 501 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 CNNM3Q8NE01 707 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 SAP25Q8TEE9 199 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 SLC44A1Q8WWI5 657 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 NDRG1Q92597 394 aaKnown RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 NXNL1Q96CM4 212 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 MS4A10Q96PG2 267 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 GBP5Q96PP8 586 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 GCOM2Q9BZD3 368 aaPredicted RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 GFRA4Q9GZZ7 299 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 EQTNQ9NQ60 294 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 FBXL2Q9UKC9 423 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 FAF1Q9UNN5 650 aaPredicted RBP3.52□□□□□ -1.85
CD44-235ENST00000532339 KLHL20Q9Y2M5 609 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 OR2W1Q9Y3N9 320 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 PCLOQ9Y6V0 5065 aa3.52□□□□□ -1.85
CD44-235ENST00000532339 SERINC4A6NH21 518 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 EFCAB7A8K855 629 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 TO15178 435 aa3.51□□□□□ -1.85
CD44-235ENST00000532339 CSDE1O75534 798 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms