RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CCDC166P0CW27 439 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 EPORP19235 508 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 CHRNB4P30926 498 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 CASQ1P31415 396 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 SOX3P41225 446 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 RPL21P46778 160 aaKnown RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 KCNC1P48547 511 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 HSPA7P48741 367 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 NR0B1P51843 470 aaKnown RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 HK2P52789 917 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 PPIAP62937 165 aaKnown RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 TGM3Q08188 693 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 BMPR2Q13873 1038 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 DOC2AQ14183 400 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 E2F2Q14209 437 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 PDK4Q16654 411 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 FBXO48Q5FWF7 155 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 PAOXQ6QHF9 649 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 IL20RBQ6UXL0 311 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 CEP128Q6ZU80 1094 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 CDH24Q86UP0 819 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 GPSM1Q86YR5 675 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 SPATA6LQ8N4H0 392 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 RPRMLQ8N4K4 120 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 PDPRQ8NCN5 879 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 BBOF1Q8ND07 529 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 OR14A16Q8NHC5 309 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 LILRB4Q8NHJ6 448 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 RND1Q92730 232 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 KIAA1191Q96A73 305 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 ESAMQ96AP7 390 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 TSPAN17Q96FV3 270 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 KCNC2Q96PR1 638 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 GPR22Q99680 433 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 ALOXE3Q9BYJ1 711 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 TTTY12Q9BZ98 90 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 DEFB127Q9H1M4 99 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 CAB39LQ9H9S4 337 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 NPDC1Q9NQX5 325 aaPredicted RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 PTBP2Q9UKA9 531 aaKnown RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 RNF6Q9Y252 685 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 MTO1Q9Y2Z2 717 aaKnown RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.53□□□□□ -0.72
VPS28-214ENST00000531032 C2CD3Q4AC94 2353 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 DNAJC13O75165 2243 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 OR14I1A6ND48 311 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 FAM166BA8MTA8 275 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 CXorf49A8MYA2 514 aaPredicted RBP10.52□□□□□ -0.73
VPS28-214ENST00000531032 PHGDHO43175 533 aaKnown RBP10.52□□□□□ -0.73
VPS28-214ENST00000531032 TOXO94900 526 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SCELO95171 688 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 IGHG3P01860 377 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 CD1DP15813 335 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 MSX1P28360 303 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 CASP2P42575 452 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 ATP6V0D1P61421 351 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 RNF4P78317 190 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 PLGLB1Q02325 96 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 STX4Q12846 297 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 CALCOCO2Q13137 446 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 LAPTM5Q13571 262 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SERTAD2Q14140 314 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 OR4D1Q15615 310 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 ZKSCAN8Q15776 578 aaPredicted RBP10.52□□□□□ -0.73
VPS28-214ENST00000531032 TBCCQ15814 346 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 PAGE2BQ5JRK9 111 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 NDUFAF5Q5TEU4 345 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SPNS3Q6ZMD2 512 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 ZNF793Q6ZN11 406 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 RTL4Q6ZR62 310 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 GK5Q6ZS86 529 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 CAPN12Q6ZSI9 719 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 UBE3DQ7Z6J8 389 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SLC22A16Q86VW1 577 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 ZNF321PQ8N8H1 164 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SNX31Q8N9S9 440 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 GOLM1Q8NBJ4 401 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SRFBP1Q8NEF9 429 aaKnown RBP10.52□□□□□ -0.73
VPS28-214ENST00000531032 SLC2A12Q8TD20 617 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SCYL1Q96KG9 808 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 SGCZQ96LD1 299 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 UBXN10Q96LJ8 280 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 F2RL3Q96RI0 385 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 RBBP8Q99708 897 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 FAM173AQ9BQD7 235 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 TBCDQ9BTW9 1192 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 MS4A8Q9BY19 250 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 OR8D2Q9GZM6 311 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 ROGDIQ9GZN7 287 aa10.52□□□□□ -0.73
VPS28-214ENST00000531032 INTS1Q8N201 2190 aaKnown RBP10.51□□□□□ -0.73
VPS28-214ENST00000531032 MYOCOSA0A1B0GUC4 107 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 A0A1B0GVC2 190 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 NKX2-6A6NCS4 301 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 FAM187AA6NFU0 413 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 FAM90A27PA6NNH2 459 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 FOXO6A8MYZ6 492 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 C17orf105B2RV13 164 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 NPIPA2E9PIF3 369 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 NPIPA3F8WFD2 350 aa10.51□□□□□ -0.73
VPS28-214ENST00000531032 ZNF354AO60765 605 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms