RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TGFBR3LH3BV60 316 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 B4GALT2O60909 372 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 AIFM1O95831 613 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 RECKO95980 971 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 FHP07954 510 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 ALOX15P16050 662 aaPredicted RBP13.93□□□□□ -0.18
COL9A3-209ENST00000469852 PTPN4P29074 926 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 MAPK12P53778 367 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 SKP1P63208 163 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 BTG2P78543 158 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 OCA2Q04671 838 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 IL10RAQ13651 578 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 NOXRED1Q6NXP6 359 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 CYP20A1Q6UW02 462 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 LARP4Q71RC2 724 aaKnown RBP eCLIP13.93□□□□□ -0.18
COL9A3-209ENST00000469852 PAGE2Q7Z2X7 111 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 GPR180Q86V85 440 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 SPACA3Q8IXA5 215 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 KIRREL3Q8IZU9 778 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 RFWD2Q8NHY2 731 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 TBC1D20Q96BZ9 403 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 MIEF2Q96C03 454 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 TM4SF18Q96CE8 201 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 SLC45A3Q96JT2 553 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 ZNF317Q96PQ6 595 aaPredicted RBP13.93□□□□□ -0.18
COL9A3-209ENST00000469852 OR52B2Q96RD2 323 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 EBF4Q9BQW3 602 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 WDR54Q9H977 334 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 CLK4Q9HAZ1 481 aaKnown RBP13.93□□□□□ -0.18
COL9A3-209ENST00000469852 RIC8BQ9NVN3 520 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 LYARQ9NX58 379 aaKnown RBP13.93□□□□□ -0.18
COL9A3-209ENST00000469852 VTI1BQ9UEU0 232 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 SSUH2Q9Y2M2 353 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 PCDHGA6Q9Y5G7 932 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 ANKRD11Q6UB99 2663 aaPredicted RBP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 URB1O60287 2271 aaKnown RBP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 MYOCOSA0A1B0GUC4 107 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 GNG14A0A1W2PPG7 69 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 GLOD5A6NK44 160 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 SLCO1B7G3V0H7 640 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 PROM1O43490 865 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 VIMP08670 466 aaKnown RBP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 ANXA4P09525 319 aaPredicted RBP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 SDC1P18827 310 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 CPN2P22792 545 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 ITPKBP27987 946 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 RPS15P62841 145 aaKnown RBP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 RHAGQ02094 409 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 TNFRSF17Q02223 184 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 SF3A3Q12874 501 aaKnown RBP eCLIP13.92□□□□□ -0.189e-8■■■□□ 18.1
COL9A3-209ENST00000469852 ATP6AP1LQ52LC2 224 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 ATP1A1-AS1Q5TC04 95 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 EPGNQ6UW88 154 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 AMER2Q8N7J2 671 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 OR2Y1Q8NGV0 311 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 CLHC1Q8NHS4 586 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 C16orf78Q8WTQ4 265 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 TSLPQ969D9 159 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 MAELQ96JY0 434 aaKnown RBP13.92□□□□□ -0.18
COL9A3-209ENST00000469852 EGLN2Q96KS0 407 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 PPP3R2Q96LZ3 170 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 OR1F2PQ96R84 312 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 CCT7Q99832 543 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 DPH1Q9BZG8 443 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 VN1R1Q9GZP7 353 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 NPHS2Q9NP85 383 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 C14orf105Q9NVL8 296 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 HEY2Q9UBP5 337 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 BAIAP2L1Q9UHR4 511 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 MKL2Q9ULH7 1088 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 CLDN16Q9Y5I7 305 aa13.92□□□□□ -0.18
COL9A3-209ENST00000469852 A0A1W2PS29 197 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 TRPC5OSA6NMA1 111 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 IDSB3KWA1 339 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 PSMD12O00232 456 aaPredicted RBP13.91□□□□□ -0.18
COL9A3-209ENST00000469852 DIAPH2O60879 1101 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 IL3P08700 152 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 FURINP09958 794 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 ALDOCP09972 364 aaKnown RBP13.91□□□□□ -0.18
COL9A3-209ENST00000469852 BCKDHAP12694 445 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 MAOAP21397 527 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 FOLR3P41439 243 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 IDH3AP50213 366 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 AQP5P55064 265 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 TAS2R50P59544 299 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 MC1RQ01726 317 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 TUBB8Q3ZCM7 444 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 MINDY4Q4G0A6 757 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 NDUFAF5Q5TEU4 345 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 MFSD4BQ5TF39 518 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 IL23RQ5VWK5 629 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 FAAH2Q6GMR7 532 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 LANCL3Q6ZV70 420 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 CLNKQ7Z7G1 428 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 HOMEZQ8IX15 550 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 FNDC5Q8NAU1 212 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 CDC26Q8NHZ8 85 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 NUDT8Q8WV74 236 aa13.91□□□□□ -0.18
COL9A3-209ENST00000469852 STARD8Q92502 1023 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms