RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 BMP10O95393 424 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 FHP07954 510 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 IL3P08700 152 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 ZGLP1P0C6A0 271 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 G6PDP11413 515 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 DRD2P14416 443 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 JAK1P23458 1154 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 TACR1P25103 407 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 DIO3P55073 304 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 PCBP4P57723 403 aaKnown RBP14.88□□□□□ -0.03
USP40-206ENST00000443711 RPS15P62841 145 aaKnown RBP14.88□□□□□ -0.03
USP40-206ENST00000443711 TNFRSF17Q02223 184 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 KLC1Q07866 573 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 C2orf80Q0P641 193 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 HEPACAMQ14CZ8 416 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 NCF4Q15080 339 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 RPS6KA2Q15349 733 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 NKG7Q16617 165 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 GSTA3Q16772 222 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 VWA2Q5GFL6 755 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 NDUFAF5Q5TEU4 345 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 METTL21CQ5VZV1 264 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 C18orf63Q68DL7 685 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 IKBIPQ70UQ0 350 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 ZC3H7AQ8IWR0 971 aaKnown RBP14.88□□□□□ -0.03
USP40-206ENST00000443711 ZNF595Q8IYB9 648 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 TMEM132CQ8N3T6 1108 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 FAM47BQ8NA70 645 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 CDC26Q8NHZ8 85 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP40-206ENST00000443711 KIAA1143Q96AT1 154 aaPredicted RBP14.88□□□□□ -0.03
USP40-206ENST00000443711 TSSK3Q96PN8 268 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 CCT8L2Q96SF2 557 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 GPR87Q9BY21 358 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 AIG1Q9NVV5 245 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 TEX10Q9NXF1 929 aaPredicted RBP14.88□□□□□ -0.03
USP40-206ENST00000443711 DKK4Q9UBT3 224 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 CTSFQ9UBX1 484 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 CROTQ9UKG9 612 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 TRIM33Q9UPN9 1127 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 FARSAQ9Y285 508 aaKnown RBP14.88□□□□□ -0.03
USP40-206ENST00000443711 PADI2Q9Y2J8 665 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 NUP210LQ5VU65 1888 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 C1orf226A1L170 272 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 E9PBE3 544 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 SNX3O60493 162 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 KLHL41O60662 606 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 B4GALT2O60909 372 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 AIFM1O95831 613 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 ALDOCP09972 364 aaKnown RBP14.87□□□□□ -0.03
USP40-206ENST00000443711 NR2F6P10588 404 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 IDO1P14902 403 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 DLSTP36957 453 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 IRX1P78414 480 aaPredicted RBP14.87□□□□□ -0.03
USP40-206ENST00000443711 DNASE1L3Q13609 305 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 ERV3-1Q14264 604 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 MFSD4BQ5TF39 518 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 TMEM198Q66K66 360 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 FAM71E1Q6IPT2 247 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 C10orf82Q8WW14 230 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 TANKQ92844 425 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 EGLN2Q96KS0 407 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 CSF3RQ99062 836 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 RBCK1Q9BYM8 510 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 RABEP2Q9H5N1 569 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 CCDC86Q9H6F5 360 aaKnown RBP14.87□□□□□ -0.03
USP40-206ENST00000443711 RPF2Q9H7B2 306 aaKnown RBP14.87□□□□□ -0.03
USP40-206ENST00000443711 PRDM9Q9NQV7 894 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 G3BP2Q9UN86 482 aaKnown RBP14.87□□□□□ -0.03
USP40-206ENST00000443711 MAPRE3Q9UPY8 281 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 PCDHA9Q9Y5H5 950 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 DCHS1Q96JQ0 3298 aa14.87□□□□□ -0.03
USP40-206ENST00000443711 LOC101059948A0A1B0GTJ6 334 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 MED19A0JLT2 244 aaPredicted RBP14.86□□□□□ -0.03
USP40-206ENST00000443711 CNOT3O75175 753 aaKnown RBP14.86□□□□□ -0.03
USP40-206ENST00000443711 JRKO75564 520 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 FAM107AO95990 144 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 NCF2P19878 526 aaPredicted RBP14.86□□□□□ -0.03
USP40-206ENST00000443711 ALDH9A1P49189 494 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 CLDN8P56748 225 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 HSD17B7P56937 341 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 STX1BP61266 288 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 TGIF1Q15583 401 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 MINDY4Q4G0A6 757 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 OR52E8Q6IFG1 317 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 RIPOR1Q6ZS17 1223 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 PIGWQ7Z7B1 504 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 PRSS58Q8IYP2 241 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 SHISA5Q8N114 240 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 ENDOVQ8N8Q3 282 aaKnown RBP14.86□□□□□ -0.03
USP40-206ENST00000443711 CLHC1Q8NHS4 586 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 GATA6Q92908 595 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 EFHD1Q9BUP0 239 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 PRTFDC1Q9NRG1 225 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 LANCL2Q9NS86 450 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 KCND3Q9UK17 655 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 PSME2Q9UL46 239 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 MKL2Q9ULH7 1088 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 PTRH2Q9Y3E5 179 aaKnown RBP14.86□□□□□ -0.03
USP40-206ENST00000443711 MMACHCQ9Y4U1 282 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms