RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 NOL3O60936 208 aaKnown RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 NDUFS2O75306 463 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBX6O95947 436 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3HP0C7X1 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 COL9A1P20849 921 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PCMT1P22061 227 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PRPH2P23942 346 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 CTHP32929 405 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 FEN1P39748 380 aaKnown RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 MAGEA2P43356 314 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PNLIPRP1P54315 467 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PRKAG1P54619 331 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 LSM11P83369 360 aaKnown RBP eCLIP9.03□□□□□ -0.965e-6■■■□□ 16.8
CUX1-206ENST00000437600 CDK3Q00526 305 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 NPRL3Q12980 569 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 CAMK2GQ13555 558 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3GQ6DHY5 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3CQ6IPX1 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PNCKQ6P2M8 343 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 SLC16A12Q6ZSM3 486 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 C11orf74Q86VG3 221 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 NRSN1Q8IZ57 195 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3Q8IZP1 549 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 TMCO5AQ8N6Q1 288 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 FAR1Q8WVX9 515 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 SLC5A11Q8WWX8 675 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 DNASE1L2Q92874 299 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 FKBP10Q96AY3 582 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 ROGDIQ9GZN7 287 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 REEP4Q9H6H4 257 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 MIEF1Q9NQG6 463 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 DMRT3Q9NQL9 472 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 FAM120CQ9NX05 1096 aaKnown RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 NDRG2Q9UN36 371 aaKnown RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 PCDHGA10Q9Y5H3 936 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 SPTBP11277 2137 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 A0A1W2PRB8 838 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 A0A1W2PS29 197 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 H0Y8X5 98 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TNFRSF11BO00300 401 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 FAM20BO75063 409 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 CPNE6O95741 557 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 GSTM2P28161 218 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 KIR2DL1P43626 348 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 CLDN2P57739 230 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 ZNF763Q0D2J5 394 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 DBPQ10586 325 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 ADPRMQ3LIE5 342 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 NXPE4Q6UWF7 544 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 RD3Q7Z3Z2 195 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 SLC7A5P1Q8MH63 180 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 SHISA5Q8N114 240 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 NECTIN4Q96NY8 510 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PRR14Q9BWN1 585 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 RAD21L1Q9H4I0 556 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TM9SF3Q9HD45 589 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 CCDC177Q9NQR7 707 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 RAD18Q9NS91 495 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 OBP2AQ9NY56 170 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PSME2Q9UL46 239 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TMEM265A0A087WTH1 108 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 A0A1W2PQU0 124 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 ANHXE9PGG2 379 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 WBP4O75554 376 aaKnown RBP9.02□□□□□ -0.96
CUX1-206ENST00000437600 FURINP09958 794 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 C8orf89P0DMQ9 161 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 PTNP21246 168 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 ENPP1P22413 925 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 KRT20P35900 424 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 SELENOWP63302 87 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 SPIBQ01892 262 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 SCARB2Q14108 478 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 IRF4Q15306 451 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 RBM48Q5RL73 367 aaKnown RBP9.02□□□□□ -0.96
CUX1-206ENST00000437600 PERM1Q5SV97 790 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 FAM46CQ5VWP2 391 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 AMZ2Q86W34 360 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 ADGRF3Q8IZF5 1079 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 C11orf65Q8NCR3 313 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 VANGL1Q8TAA9 524 aaPredicted RBP9.02□□□□□ -0.96
CUX1-206ENST00000437600 RORBQ92753 470 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 COX4I2Q96KJ9 171 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 ZCCHC2Q9C0B9 1178 aaKnown RBP9.02□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D23Q9NUY8 699 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 IMP3Q9NV31 184 aaKnown RBP9.02□□□□□ -0.96
CUX1-206ENST00000437600 USE1Q9NZ43 259 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 RPS6KA6Q9UK32 745 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 HEATR5BQ9P2D3 2071 aa9.02□□□□□ -0.96
CUX1-206ENST00000437600 PLPP1O14494 284 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 SLC16A6O15403 523 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 OR1F1O43749 312 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 ADAM23O75077 832 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 KLF8O95600 359 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 HPRP00739 348 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 OCM2P0CE71 109 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 OCMP0CE72 109 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 HSMCR30P0CW71 290 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 HOXB2P14652 356 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 FPR1P21462 350 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 ACADLP28330 430 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms