RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CDCP1Q9H5V8 836 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 ANKRD10Q9NXR5 420 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 SPACA6W5XKT8 324 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 ZGRF1Q86YA3 2104 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 EML6Q6ZMW3 1958 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 FOXE1O00358 373 aaPredicted RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ZNF500O60304 480 aaPredicted RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 EEDO75530 441 aaKnown RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 CBX6O95503 412 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 IFNA16P05015 189 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 GSTA1P08263 222 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 BSGP35613 385 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 HERVK_113P63132 956 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ID2Q02363 134 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 STX4Q12846 297 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 CUL3Q13618 768 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 TUBA3CQ13748 450 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 EIF2S3LQ2VIR3 472 aaKnown RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 SGO1Q5FBB7 561 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 FAM219BQ5XKK7 198 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 FRG2Q64ET8 278 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 RPUSD3Q6P087 351 aaKnown RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 TUBA3EQ6PEY2 450 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 RPS19BP1Q86WX3 136 aaKnown RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 APCDD1LQ8NCL9 501 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 EPS8L3Q8TE67 593 aaKnown RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 FRG2BQ96QU4 278 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ERVK-6Q9BXR3 956 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ZNF717Q9BY31 904 aaPredicted RBP13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ALOXE3Q9BYJ1 711 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ADAP2Q9NPF8 381 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 AGPAT4Q9NRZ5 378 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 PSD3Q9NYI0 1048 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 ABI3Q9P2A4 366 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 DCDC2Q9UHG0 476 aa13.84□□□□□ -0.19
LIMS4-201ENST00000413601 SVILO95425 2214 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CROCCQ5TZA2 2017 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 RELNP78509 3460 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 PRRC2CQ9Y520 2896 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CLEC18AA5D8T8 446 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 GABRR3A8MPY1 467 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 SUPT7LO94864 414 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 OTCP00480 354 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 KRT15P19012 456 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 HSD17B3P37058 310 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CD96P40200 585 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ARFIP1P53367 373 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 HNRNPH2P55795 449 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 VSNL1P62760 191 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CLCQ05315 142 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 IFT88Q13099 833 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 UBAP2LQ14157 1087 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 TERF2Q15554 542 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ELAVL1Q15717 326 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 GGTA1PQ4G0N0 100 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 UNC50Q53HI1 259 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ZNF678Q5SXM1 525 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 LETMD1Q6P1Q0 360 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 FAM180AQ6UWF9 173 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CLEC18BQ6UXF7 455 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 GPR180Q86V85 440 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CNPY4Q8N129 248 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ZCCHC7Q8N3Z6 543 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 CLEC18CQ8NCF0 446 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 SUN3Q8TAQ9 357 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 TRPC4APQ8TEL6 797 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 THAP3Q8WTV1 239 aaPredicted RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 FAR1Q8WVX9 515 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 NCLNQ969V3 563 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ANKRD9Q96BM1 317 aaPredicted RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 SIGLEC12Q96PQ1 595 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 TMEM237Q96Q45 408 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 TAAR6Q96RI8 345 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 SERPINI1Q99574 410 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 UTP23Q9BRU9 249 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 DEFB126Q9BYW3 111 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 FARSBQ9NSD9 589 aaKnown RBP13.83□□□□□ -0.2
LIMS4-201ENST00000413601 VTI1BQ9UEU0 232 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 PHF11Q9UIL8 331 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ZNF225Q9UK10 706 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 ATG4BQ9Y4P1 393 aa13.83□□□□□ -0.2
LIMS4-201ENST00000413601 A0A0A6YYD5 115 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 TRBV11-1A0A0K0K1C0 115 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 BLACEA4D250 179 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 PROM1O43490 865 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 TMPRSS11DO60235 418 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 FGF17O60258 216 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 PRAMEF2O60811 474 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 PRKRAO75569 313 aaKnown RBP13.82□□□□□ -0.2
LIMS4-201ENST00000413601 OR4F21O95013 312 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 SLU7O95391 586 aaKnown RBP13.82□□□□□ -0.2
LIMS4-201ENST00000413601 GBAP04062 536 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 TNNI3P19429 210 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 IMPDH1P20839 514 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 ATP5F1P24539 256 aaPredicted RBP13.82□□□□□ -0.2
LIMS4-201ENST00000413601 TPP2P29144 1249 aaPredicted RBP13.82□□□□□ -0.2
LIMS4-201ENST00000413601 CLCN2P51788 898 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 GPR143P51810 404 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 MLF1P58340 268 aa13.82□□□□□ -0.2
LIMS4-201ENST00000413601 TNFRSF17Q02223 184 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms