RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 LIN28AQ9H9Z2 209 aaKnown RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ERVK13-1Q9NX77 482 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 MAP10Q9P2G4 905 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 POMT1Q9Y6A1 747 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 IRF6O14896 467 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 FAM155BO75949 473 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 MBP02144 154 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ITGAMP11215 1152 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 LEPRP48357 1165 aaKnown RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 FKBP1AP62942 108 aaKnown RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 GRIN2CQ14957 1233 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 PTPRRQ15256 657 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 TOMM20Q15388 145 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 KCNJ8Q15842 424 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 GRIK4Q16099 956 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ZER1Q7Z7L7 766 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 CHTF18Q8WVB6 975 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 CNOT2Q9NZN8 540 aaKnown RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 LIPT1Q9Y234 373 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 DLGAP4Q9Y2H0 992 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 SCN4AP35499 1836 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 SEC14L5O43304 696 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 MAFKO60675 156 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ELK4P28324 431 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 IL10RBQ08334 325 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ENPP2Q13822 863 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ABHD13Q7L211 337 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 RHEBL1Q8TAI7 183 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ACOT11Q8WXI4 607 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 NIPSNAP3BQ9BS92 247 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 SLC25A31Q9H0C2 315 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ADRB2P07550 413 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 CEP68Q76N32 757 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 KCNJ9Q92806 393 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 CAPN14A8MX76 684 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 WNT9AO14904 365 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 SLC22A5O76082 557 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 ADAP00813 363 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 TP53P04637 393 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 TGM4P49221 684 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 GPX6P59796 221 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 XYLT1Q86Y38 959 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 SLC35F5Q8WV83 523 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 KCNH6Q9H252 994 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 TMEM39AQ9NV64 488 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 KIAA1522Q9P206 1035 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 RFXAPO00287 272 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 EPOP01588 193 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 CTSHP09668 335 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 UPP1Q16831 310 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 TBC1D25Q3MII6 688 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 CORO6Q6QEF8 472 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 EXOSC8Q96B26 276 aaKnown RBP12.44□□□□□ -0.42
COL6A3-206ENST00000409809 VPS25Q9BRG1 176 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 IFT22Q9H7X7 185 aa12.44□□□□□ -0.42
COL6A3-206ENST00000409809 TCRBV5S4A2TA0A5A2 114 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 PAGE1O75459 146 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 MYCLP1P12525 358 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 AKT2P31751 481 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 ELOAQ14241 798 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 RHBDF2Q6PJF5 856 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 NPAS3Q8IXF0 933 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 BBS10Q8TAM1 723 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 CORO2AQ92828 525 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 CMTM7Q96FZ5 175 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 CNN2Q99439 309 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 EVA1AQ9H8M9 152 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 NRCAMQ92823 1304 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 OR6C74A6NCV1 312 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 NPIPA7E9PJI5 369 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 MATN4O95460 622 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 NPIPA8P0DM63 369 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 NFIXQ14938 502 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 TMEM236Q5W0B7 351 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 PIGZQ86VD9 579 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 PAPD5Q8NDF8 572 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 ACO2Q99798 780 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 SLC32A1Q9H598 525 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 PCDHB9Q9Y5E1 797 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 A0A1W2PPL8 197 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 A0A1W2PRB8 838 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 HHLA1C9JL84 531 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 INHAP05111 366 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 HSPB3Q12988 150 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 PCLAFQ15004 111 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 SLC39A4Q6P5W5 647 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 CYS1Q717R9 158 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 CMIPQ8IY22 773 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 SENP8Q96LD8 212 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 TAAR1Q96RJ0 339 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 AOC2O75106 756 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 RECQL4O94761 1208 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 POLR2HP52434 150 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 FNDC3BQ53EP0 1204 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 RNASE10Q5GAN6 216 aaKnown RBP12.43□□□□□ -0.42
COL6A3-206ENST00000409809 MROQ9BYG7 248 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 SMOXQ9NWM0 555 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 SOHLH2Q9NX45 425 aa12.43□□□□□ -0.42
COL6A3-206ENST00000409809 ZFC3H1O60293 1989 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms