RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 C6orf120Q7Z4R8 191 aa13.18□□□□□ -0.3
VCP-201ENST00000358901 ADAD1Q96M93 576 aaKnown RBP13.18□□□□□ -0.3
VCP-201ENST00000358901 RC3H2Q9HBD1 1191 aaKnown RBP13.18□□□□□ -0.3
VCP-201ENST00000358901 GJD2Q9UKL4 321 aa13.18□□□□□ -0.3
VCP-201ENST00000358901 ISPDA4D126 451 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ZNF860A6NHJ4 632 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ZNF821O75541 412 aaPredicted RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 LDOC1O95751 146 aaPredicted RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 SCRN3Q0VDG4 424 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 NUP54Q7Z3B4 507 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 OR13J1Q8NGT2 312 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 LRR1Q96L50 414 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SECISBP2Q96T21 854 aaKnown RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 AGPAT4Q9NRZ5 378 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ELOVL2Q9NXB9 296 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 MED11Q9P086 117 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 EXTL2Q9UBQ6 330 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 COPS7AQ9UBW8 275 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SPEF1Q9Y4P9 236 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 TIAM2Q8IVF5 1701 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 TRAV6A0A075B6T7 132 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 TCRBV3S1A0A5B6 114 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 M0QZQ0 153 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 GPR39O43194 453 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SLC16A8O95907 504 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 S100A6P06703 90 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 RPS17P08708 135 aaKnown RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 OPRL1P41146 370 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SLC9A3P48764 834 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 PPP5CP53041 499 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 COL9A2Q14055 689 aaPredicted RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 PKDCCQ504Y2 493 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 SAMD12Q8N8I0 201 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SMIM14Q96QK8 99 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 TTYH2Q9BSA4 534 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 B3GNT4Q9C0J1 378 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 LYARQ9NX58 379 aaKnown RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 NLGN3Q9NZ94 848 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 MYH4Q9Y623 1939 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 MYO7AQ13402 2215 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 FAAHO00519 579 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 B4GALT2O60909 372 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 CNMDO75829 334 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 CDK4P11802 303 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ATF4P18848 351 aaPredicted RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 DCKP27707 260 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ZNF234Q14588 700 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ODF4Q2M2E3 257 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 FAM180BQ6P0A1 224 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ZNF627Q7L945 461 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SLC22A15Q8IZD6 547 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 TRAM1L1Q8N609 369 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 HAVCR1Q96D42 359 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SGIP1Q9BQI5 828 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 TBL1XR1Q9BZK7 514 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 SPHK2Q9NRA0 654 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 GPRC5BQ9NZH0 403 aa13.17□□□□□ -0.3
VCP-201ENST00000358901 ZFR2Q9UPR6 939 aaKnown RBP13.17□□□□□ -0.3
VCP-201ENST00000358901 TCRBV5S1A1TA0A578 114 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ZBTB42B2RXF5 422 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ZNF432O94892 652 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 MT-ND5P03915 603 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 RETP07949 1114 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 GABRB3P28472 473 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 SPINT3P49223 89 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 CDK5R2Q13319 367 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ANKRD13BQ86YJ7 626 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ARMC10Q8N2F6 343 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 TMEM151AQ8N4L1 468 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 OR51A7Q8NH64 312 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ZDHHC4Q9NPG8 344 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 IFT46Q9NQC8 304 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 EXOSC1Q9Y3B2 195 aaKnown RBP13.16□□□□□ -0.3
VCP-201ENST00000358901 GPR45Q9Y5Y3 372 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 IFNA7P01567 189 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ASGR2P07307 311 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 MRPL3P09001 348 aaKnown RBP13.16□□□□□ -0.3
VCP-201ENST00000358901 RHCEP18577 417 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 GADD45AP24522 165 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 RPL6Q02878 288 aaKnown RBP13.16□□□□□ -0.3
VCP-201ENST00000358901 REM2Q8IYK8 340 aaPredicted RBP13.16□□□□□ -0.3
VCP-201ENST00000358901 RHBDF1Q96CC6 855 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 COQ8BQ96D53 544 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 SCRN2Q96FV2 425 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 NPLQ9BXD5 320 aaPredicted RBP13.16□□□□□ -0.3
VCP-201ENST00000358901 EXO5Q9H790 373 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ARNT2Q9HBZ2 717 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 HSPE1-MOB4S4R3N1 261 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 BLOC1S5-TXNDC5H3BN57 136 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 PCDHGA12O60330 932 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 KDM4BO94953 1096 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 RPS3P23396 243 aaKnown RBP eCLIP13.16□□□□□ -0.32e-7■■■■■ 31.6
VCP-201ENST00000358901 MARCH8Q5T0T0 291 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 QSOX2Q6ZRP7 698 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 PRSS48Q7RTY5 328 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ZNF551Q7Z340 670 aaPredicted RBP13.16□□□□□ -0.3
VCP-201ENST00000358901 YIPF7Q8N8F6 280 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 ZFP41Q8N8Y5 198 aa13.16□□□□□ -0.3
VCP-201ENST00000358901 DTX3Q8N9I9 347 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms