RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PIGFQ07326 219 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ITPRIPL2Q3MIP1 535 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ATAD3CQ5T2N8 411 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 KANK2Q63ZY3 851 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 PRR18Q8N4B5 295 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 KRTCAP2Q8N6L1 136 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 TRIB2Q92519 343 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 SCAMP4Q969E2 229 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 LRCH3Q96II8 777 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 OR51B6Q9H340 312 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.15□□□□□ -0.46
SDC3-201ENST00000336798 TAS2R1Q9NYW7 299 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ADH1BP00325 375 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 NADK2Q4G0N4 442 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 OR4N5Q8IXE1 308 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 DNAJB8Q8NHS0 232 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 NECAB3Q96P71 396 aaPredicted RBP12.15□□□□□ -0.46
SDC3-201ENST00000336798 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.15□□□□□ -0.46
SDC3-201ENST00000336798 TTYH3Q9C0H2 523 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ELK4P28324 431 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 CASP6P55212 293 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 MRPL49Q13405 166 aaKnown RBP12.15□□□□□ -0.46
SDC3-201ENST00000336798 HERC3Q15034 1050 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 PPP1R3AQ16821 1122 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 CHCHD4Q8N4Q1 142 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 OR4K14Q8NGD5 310 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 OSBPL7Q9BZF2 842 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 CD244Q9BZW8 370 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ZBTB20Q9HC78 741 aaPredicted RBP12.15□□□□□ -0.46
SDC3-201ENST00000336798 SCML2Q9UQR0 700 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 KDM4FA0A1W2PPD8 638 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 ARL6IP5O75915 188 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 YES1P07947 543 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 CBSLP0DN79 551 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 CBSP35520 551 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 LEPRP48357 1165 aaKnown RBP12.15□□□□□ -0.46
SDC3-201ENST00000336798 POU3F4P49335 361 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 S100A12P80511 92 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 IL17FQ96PD4 163 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 TAS2R9Q9NYW1 312 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 GJD2Q9UKL4 321 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 A6NL46 340 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 C2orf74A8MZ97 194 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 H7C2Y5 167 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 SLC22A1O15245 554 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 RAD51DO75771 328 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 NAT1P18440 290 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 ZNF84P51523 738 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 PLCXD2Q0VAA5 305 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 ELOCQ15369 112 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 GTF2IRD2BQ6EKJ0 949 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 FAM180BQ6P0A1 224 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 GTF2IRD2Q86UP8 949 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 TDRPQ86YL5 185 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 OR2S2Q9NQN1 319 aa12.15□□□□□ -0.47
SDC3-201ENST00000336798 ZNF850A8MQ14 1090 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 YY2O15391 372 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 LATO43561 262 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 PFKLP17858 780 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 MLC1Q15049 377 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ZER1Q7Z7L7 766 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 OR4C15Q8NGM1 316 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 SORCS1Q8WY21 1168 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ASB9Q96DX5 294 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CPNE2Q96FN4 548 aaPredicted RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 RDH12Q96NR8 316 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 DEFB126Q9BYW3 111 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 TPSD1Q9BZJ3 242 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 SIX2Q9NPC8 291 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 GJB5O95377 273 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CSTAP01040 98 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 IFNA2P01563 188 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CD53P19397 219 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 RPS26P62854 115 aaKnown RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 NIPAL4Q0D2K0 466 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 DCUN1D3Q8IWE4 304 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 IRF7Q92985 503 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 PGAM5Q96HS1 289 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 P2RY13Q9BPV8 354 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 EPHA6Q9UF33 1036 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 KCNIP3Q9Y2W7 256 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 MT-ND5P03915 603 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 IRF2P14316 349 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 GGT2P36268 569 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CDNFQ49AH0 187 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 DEFB134Q4QY38 66 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 C14orf80Q86SX3 495 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 MOCOSQ96EN8 888 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 AURKBQ96GD4 344 aaPredicted RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 TMEM175Q9BSA9 504 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 FBRSQ9HAH7 460 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 SSU72Q9NP77 194 aaKnown RBP12.14□□□□□ -0.47
SDC3-201ENST00000336798 MTMR10Q9NXD2 777 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 DNAJB4Q9UDY4 337 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 SLC7A8Q9UHI5 535 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 CLEC4EQ9ULY5 219 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 SLC7A11Q9UPY5 501 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ADORA3P0DMS8 318 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 ACVR1BP36896 505 aa12.14□□□□□ -0.47
SDC3-201ENST00000336798 PGGT1BP53609 377 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms