RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SUV39H2Q9H5I1 410 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 REEP4Q9H6H4 257 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 FZD3Q9NPG1 666 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 C11orf16Q9NQ32 467 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 STOX2Q9P2F5 926 aaPredicted RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 ATP6V1HQ9UI12 483 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 PPIL1Q9Y3C6 166 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 C12orf71A8MTZ7 269 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 AKR7A2O43488 359 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 CSO75390 466 aaKnown RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 GSTM1P09488 218 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 ALDH9A1P49189 494 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.84□□□□□ -0.35
SKA3-202ENST00000314759 EFR3AQ14156 821 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 SPHARQ15513 63 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 WDR53Q7Z5U6 358 aaPredicted RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 SLC34A3Q8N130 599 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.84□□□□□ -0.35
SKA3-202ENST00000314759 ASZ1Q8WWH4 475 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 SCAMP4Q969E2 229 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 TRIM63Q969Q1 353 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 RIPOR3Q96MK2 946 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 C11orf54Q9H0W9 315 aaPredicted RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 ELAC1Q9H777 363 aaKnown RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 RAB23Q9ULC3 237 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 MAPRE3Q9UPY8 281 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 TRBC2A0A5B9 178 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 SLC35F4A4IF30 521 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 OR2AG2A6NM03 316 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 FADS2P1A8MWK0 482 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 FFAR1O14842 300 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 SLCO2B1O94956 709 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 SLC16A8O95907 504 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 IGFBP1P08833 259 aaPredicted RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 RHCEP18577 417 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 PSMA1P25786 263 aaKnown RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 CSTF2P33240 577 aaKnown RBP eCLIP12.83□□□□□ -0.36
SKA3-202ENST00000314759 OR3A3P47888 321 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 ACLYP53396 1101 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 PCBP3P57721 371 aaKnown RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 SNRPD2P62316 118 aaKnown RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 DBF4BQ8NFT6 615 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 ENOPH1Q9UHY7 261 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 YIPF1Q9Y548 306 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 DSPPQ9NZW4 1301 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 TRBV4-1A0A0J9YWV2 114 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 MANSC4A6NHS7 340 aaPredicted RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 B4DXG7 233 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 ZNF670-ZNF695F2Z2N8 137 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 ZNF780AO75290 641 aaPredicted RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 PSIP1O75475 530 aaKnown RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 CYP17A1P05093 508 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 HBQ1P09105 142 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 SRCP12931 536 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 ZNF157P51786 506 aaPredicted RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 LRRC74AQ0VAA2 488 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 TXNDC8Q6A555 127 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 TRIM40Q6P9F5 258 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 GLCCI1Q86VQ1 547 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 PEX5LQ8IYB4 626 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 OXR1Q8N573 874 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 LILRA3Q8N6C8 439 aaPredicted RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 MAP6Q96JE9 813 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 WDFY2Q96P53 400 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 PKP4Q99569 1192 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 WRAP53Q9BUR4 548 aaKnown RBP12.83□□□□□ -0.36
SKA3-202ENST00000314759 DNAJC27Q9NZQ0 273 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 B4GALT6Q9UBX8 382 aa12.83□□□□□ -0.36
SKA3-202ENST00000314759 NINQ8N4C6 2090 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 TLR4O00206 839 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 KPNA5O15131 536 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 IFI30P13284 250 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 MYL9P24844 172 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 RPS5P46782 204 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 SNRPD1P62314 119 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 MXD1Q05195 221 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 ZNF763Q0D2J5 394 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 PUM1Q14671 1186 aaKnown RBP eCLIP12.82□□□□□ -0.36
SKA3-202ENST00000314759 PRSS53Q2L4Q9 553 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 ZNF630Q2M218 657 aaPredicted RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 GDPGP1Q6ZNW5 385 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.82□□□□□ -0.36
SKA3-202ENST00000314759 ANGPTL6Q8NI99 470 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 ZNF461Q8TAF7 563 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 NEIL2Q969S2 332 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 CXorf40BQ96DE9 158 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 TRMT2BQ96GJ1 504 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 VN1R3Q9BXE9 311 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 REV1Q9UBZ9 1251 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SEC14L4Q9UDX3 406 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SNX11Q9Y5W9 270 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 CCDC88CQ9P219 2028 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 ARRDC5A6NEK1 342 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 CCDC182A6NF36 153 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SAP18O00422 153 aaKnown RBP12.82□□□□□ -0.36
SKA3-202ENST00000314759 SOX14O95416 240 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 IFNA14P01570 189 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 FURINP09958 794 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 IMPA1P29218 277 aa12.82□□□□□ -0.36
SKA3-202ENST00000314759 SSTR4P31391 388 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms