RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 PRTFDC1Q9NRG1 225 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 ASB4Q9Y574 426 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 TENM4Q6N022 2769 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 A0A0A6YYD5 115 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 TCRBV16S1A1N1A0A5B0 115 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 PSMD12O00232 456 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 RGS16O15492 202 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 SUV39H1O43463 412 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 ITM2AO43736 263 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 UGDHO60701 494 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 PIK3CBP42338 1070 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 PGDP52209 483 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 RAE1P78406 368 aaKnown RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 DUSP2Q05923 314 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 PRSS53Q2L4Q9 553 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 CCDC153Q494R4 210 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 TNFAIP8L3Q5GJ75 292 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 ZNF468Q5VIY5 522 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 C1orf52Q8N6N3 182 aaKnown RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 RGMAQ96B86 450 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 ZNF382Q96SR6 550 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 SMAD5Q99717 465 aaKnown RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 TBCDQ9BTW9 1192 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 PITHD1Q9GZP4 211 aaPredicted RBP11.28□□□□□ -0.6
SCFD1-201ENST00000311943 ADNPQ9H2P0 1102 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 TUBB1Q9H4B7 451 aa11.28□□□□□ -0.6
SCFD1-201ENST00000311943 GCN1Q92616 2671 aaKnown RBP11.27□□□□□ -0.6
SCFD1-201ENST00000311943 AIFM1O95831 613 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 CD63P08962 238 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 CPN2P22792 545 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 RRADP55042 308 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 LCP2Q13094 533 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 GGTA1PQ4G0N0 100 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 SLC6A19Q695T7 634 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 MRM1Q6IN84 353 aaKnown RBP11.27□□□□□ -0.61
SCFD1-201ENST00000311943 COMMD6Q7Z4G1 85 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 NFAM1Q8NET5 270 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-201ENST00000311943 OR2T11Q8NH01 316 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 UBE2E3Q969T4 207 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 ARL8AQ96BM9 186 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 SMC6Q96SB8 1091 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 HES7Q9BYE0 225 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 PRDM9Q9NQV7 894 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 TRPS1Q9UHF7 1281 aa11.27□□□□□ -0.61
SCFD1-201ENST00000311943 PCDHGA9Q9Y5G4 932 aaKnown RBP11.27□□□□□ -0.61
SCFD1-201ENST00000311943 FOXE1O00358 373 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 SLC28A2O43868 658 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ESRRBO95718 433 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 JUNP05412 331 aaKnown RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 FAM58BPP0C7Q3 252 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 PTX3P26022 381 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 SLC26A5P58743 744 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 FOLH1Q04609 750 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ACTN3Q08043 901 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 IFT88Q13099 833 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ARL13AQ5H913 290 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 LIPMQ5VYY2 423 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 QSOX2Q6ZRP7 698 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 LCA5Q86VQ0 697 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 SLC22A9Q8IVM8 553 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 RIBC1Q8N443 379 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 TEX19Q8NA77 164 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 PTPMT1Q8WUK0 201 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 CNDP1Q96KN2 507 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ALOXE3Q9BYJ1 711 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 LHPPQ9H008 270 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 DDX31Q9H8H2 851 aaKnown RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ANKRA2Q9H9E1 313 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 PPCSQ9HAB8 311 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 NTNG1Q9Y2I2 539 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 A0A1W2PQ72 361 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 PROM1O43490 865 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ZNF354AO60765 605 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 SCELO95171 688 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 GSTM2P28161 218 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 HMOX2P30519 316 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 TLE1Q04724 770 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 C19orf57Q0VDD7 668 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 CUL3Q13618 768 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 CASP8Q14790 479 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 TMEM35AQ53FP2 167 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 JMJD6Q6NYC1 403 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 METTL2BQ6P1Q9 378 aaKnown RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 CUZD1Q86UP6 607 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 GPR180Q86V85 440 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 CRLF3Q8IUI8 442 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 ANKRD42Q8N9B4 389 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 APCDD1LQ8NCL9 501 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 MGARPQ8TDB4 240 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 PPP1R36Q96LQ0 422 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 FAM117AQ9C073 453 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 RPF2Q9H7B2 306 aaKnown RBP11.26□□□□□ -0.61
SCFD1-201ENST00000311943 MKS1Q9NXB0 559 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 TUBD1Q9UJT1 453 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 TMCO1Q9UM00 188 aa11.26□□□□□ -0.61
SCFD1-201ENST00000311943 CCDC151A5D8V7 595 aa11.25□□□□□ -0.61
SCFD1-201ENST00000311943 TRIM13O60858 407 aa11.25□□□□□ -0.61
SCFD1-201ENST00000311943 WDPCPO95876 746 aa11.25□□□□□ -0.61
SCFD1-201ENST00000311943 IGHEP01854 428 aa11.25□□□□□ -0.61
SCFD1-201ENST00000311943 IFNA16P05015 189 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms