RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 UNC5DQ6UXZ4 953 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 LINGO4Q6UY18 593 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 OR5AK3PQ8NH89 298 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 SKA2Q8WVK7 121 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 MARVELD1Q9BSK0 173 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 MCOLN1Q9GZU1 580 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PPP1R3EQ9H7J1 279 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ANKRA2Q9H9E1 313 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 RDH8Q9NYR8 311 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 LGALS8O00214 317 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 TOR1AO14656 332 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PPM1BO75688 479 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PRAMEF1O95521 474 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 GBAP04062 536 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ANXA8P13928 327 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 LHCGRP22888 699 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 GRK4P32298 578 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 HTR7P34969 479 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 SOX18P35713 384 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 SRP9P49458 86 aaKnown RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 VSX2P58304 361 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 ZNF91Q05481 1191 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 IL10RBQ08334 325 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 TAF1AQ15573 450 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 TUSC1Q2TAM9 212 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 KIF18BQ86Y91 864 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 MS4A4AQ96JQ5 239 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 FAM193BQ96PV7 902 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 HDHD2Q9H0R4 259 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 NMNAT1Q9HAN9 279 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 ACER3Q9NUN7 267 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 CPNE7Q9UBL6 633 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 POM121CA8CG34 1229 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 SERPINI2O75830 405 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 CLDN9O95484 217 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 ITGB7P26010 798 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 HOXD10P28358 340 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 HMGCLP35914 325 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 CRISP1P54107 249 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 SRP54P61011 504 aaKnown RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 SELENOWP63302 87 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 MZT2BQ6NZ67 158 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 KANSL1Q7Z3B3 1105 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 OR4K1Q8NGD4 311 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 NFKBIDQ8NI38 313 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 KLHL15Q96M94 604 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 PSKH2Q96QS6 385 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 RBP7Q96R05 134 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 SMAD5Q99717 465 aaKnown RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 TSSK6Q9BXA6 273 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 FAM126AQ9BYI3 521 aaPredicted RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 MED28Q9H204 178 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 GPATCH2Q9NW75 528 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 SLCO1C1Q9NYB5 712 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 TRPM5Q9NZQ8 1165 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 KCMF1Q9P0J7 381 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 FTSJ1Q9UET6 329 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 PADI2Q9Y2J8 665 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 CDH10Q9Y6N8 788 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 PATJQ8NI35 1801 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 PLXNA4Q9HCM2 1894 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 TRBV4-1A0A0J9YWV2 114 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 TLR4O00206 839 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 SEC14L5O43304 696 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 STK16O75716 305 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 ZNF157P51786 506 aaPredicted RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 LSM11P83369 360 aaKnown RBP eCLIP12.88□□□□□ -0.35
SKA3-201ENST00000298260 RGNQ15493 299 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 LGALSLQ3ZCW2 172 aaPredicted RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 ARMC12Q5T9G4 340 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 CEACAM20Q6UY09 585 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 KIAA0907Q7Z7F0 614 aaPredicted RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 TTC9BQ8N6N2 239 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 DUSP18Q8NEJ0 188 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 OR6K2Q8NGY2 324 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 ST8SIA4Q92187 359 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 ASIC4Q96FT7 647 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 TMEM245Q9H330 911 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 NUDT15Q9NV35 164 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 FAM8A1Q9UBU6 413 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 PPIEQ9UNP9 301 aaKnown RBP12.88□□□□□ -0.35
SKA3-201ENST00000298260 NCKAP1Q9Y2A7 1128 aa12.88□□□□□ -0.35
SKA3-201ENST00000298260 C2orf92A0A1B0GVN3 265 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 ZAR1LA6NP61 321 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 CXCL11O14625 94 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 CASKO14936 926 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 PRAMEF11O60813 436 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 GADD45GO95257 159 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 SMIM10L2AP0DMW4 78 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 SMIM10L2BP0DMW5 78 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 TFPIP10646 304 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 PCSK1P29120 753 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 FABP5Q01469 135 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 CSTF1Q05048 431 aaKnown RBP12.87□□□□□ -0.35
SKA3-201ENST00000298260 TEAD4Q15561 434 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 ERICH5Q6P6B1 374 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 TRILQ7L0X0 811 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 KLHL6Q8WZ60 621 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 RBCK1Q9BYM8 510 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms