RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SEMG1P04279 462 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 JUNDP17535 347 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 CCNA2P20248 432 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 CNR2P34972 360 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 YAP1P46937 504 aaKnown RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 KIR2DS3Q14952 304 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 GTF2IRD2BQ6EKJ0 949 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 SLC9B2Q86UD5 537 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 GTF2IRD2Q86UP8 949 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 SYT12Q8IV01 421 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 ZDHHC21Q8IVQ6 265 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 SPARTQ8N0X7 666 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 C2orf73Q8N5S3 287 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 OR2A1Q8NGT9 310 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 CCL4L1Q8NHW4 92 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 THAP11Q96EK4 314 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 PHF12Q96QT6 1004 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 SRMSQ9H3Y6 488 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 FANCEQ9HB96 536 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 MRPS30Q9NP92 439 aaKnown RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 DMRT3Q9NQL9 472 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 TMEM184CQ9NVA4 438 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 ZNF624Q9P2J8 865 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 TMEFF2Q9UIK5 374 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 PNMA8BQ9ULN7 279 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 FAF1Q9UNN5 650 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-201ENST00000292476 PCDHGB1Q9Y5G3 927 aa16.01■□□□□ 0.15
CPSF4-201ENST00000292476 SDK1Q7Z5N4 2213 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 A0A1W2PR77 199 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 M0QX08 132 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 HS6ST1O60243 411 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 MRPS14O60783 128 aaKnown RBP16■□□□□ 0.15
CPSF4-201ENST00000292476 SCN2BO60939 215 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 FKBP9O95302 570 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 ITIH1P19827 911 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 POLR2IP36954 125 aaKnown RBP16■□□□□ 0.15
CPSF4-201ENST00000292476 SLC19A1P41440 591 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 CDKN2CP42773 168 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 ARHGDIAP52565 204 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 IST1P53990 364 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 ISL1P61371 349 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 REEP5Q00765 189 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 VEZF1Q14119 521 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 KEAP1Q14145 624 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 VMACQ2NL98 169 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 OR4F3Q6IEY1 312 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 CHTF18Q8WVB6 975 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 DNASE2BQ8WZ79 361 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 C11orf24Q96F05 449 aaPredicted RBP16■□□□□ 0.15
CPSF4-201ENST00000292476 HSPA12BQ96MM6 686 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 REXO4Q9GZR2 422 aaKnown RBP16■□□□□ 0.15
CPSF4-201ENST00000292476 ADNPQ9H2P0 1102 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 XKR8Q9H6D3 395 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 PALMDQ9NP74 551 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 BTNL2Q9UIR0 455 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 SNX7Q9UNH6 387 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 SH2B3Q9UQQ2 575 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 ENTPD2Q9Y5L3 495 aa16■□□□□ 0.15
CPSF4-201ENST00000292476 A0A0J9YVX5 310 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SH3PXD2BA1X283 911 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 CLIC1O00299 241 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 PRICKLE3O43900 615 aaPredicted RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 NME1P15531 152 aaKnown RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 PIGAP37287 484 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 WNT3P56703 355 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 CXCR4P61073 352 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 RPS13P62277 151 aaKnown RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 CD47Q08722 323 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 NFATC3Q12968 1075 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SF1Q15637 639 aaKnown RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 UGT8Q16880 541 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 OR2T5Q6IEZ7 315 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 GALNT18Q6P9A2 607 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 EIF3MQ7L2H7 374 aaKnown RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 PIWIL3Q7Z3Z3 882 aaKnown RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 GKN2Q86XP6 184 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 ZZZ3Q8IYH5 903 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 OR2T29Q8NH02 315 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 BORCS5Q969J3 196 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 MUL1Q969V5 352 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 PANX1Q96RD7 426 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 MIR1-1HGQ9H1L0 117 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SPASTQ9UBP0 616 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 RAB23Q9ULC3 237 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SNX5Q9Y5X3 404 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SPAG17Q6Q759 2223 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 GPR179Q6PRD1 2367 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 TRBC2A0A5B9 178 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 H7BY64 318 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SLC1A7O00341 560 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 BCKDKO14874 412 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 NOBOXO60393 691 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 SEMA3DO95025 777 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 ABCB1P08183 1280 aaPredicted RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 FPR1P21462 350 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 IGFBP5P24593 272 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 DNAJA1P31689 397 aaKnown RBP15.99■□□□□ 0.15
CPSF4-201ENST00000292476 RXRGP48443 463 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 ANXA8L1Q5VT79 327 aa15.99■□□□□ 0.15
CPSF4-201ENST00000292476 TMEM179BQ7Z7N9 219 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms