RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 OR1F1O43749 312 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 PFDN1O60925 122 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 DNAJB5O75953 348 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 DUSP6Q16828 381 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 MICAQ29983 383 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 ADPRMQ3LIE5 342 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 ADCK2Q7Z695 626 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 CCDC103Q8IW40 242 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 HDDC3Q8N4P3 179 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 RAB8BQ92930 207 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 YIPF6Q96EC8 236 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 PLEKHA8Q96JA3 519 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 IGFLR1Q9H665 355 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 RHBDL2Q9NX52 303 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 CHCHD3Q9NX63 227 aaKnown RBP19.11■□□□□ 0.65
VPS53-201ENST00000291074 SELENONQ9NZV5 590 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 ICKQ9UPZ9 632 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 PLEKHM1Q9Y4G2 1056 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 TOR1BO14657 336 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 LCMT2O60294 686 aaKnown RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 B4GALT2O60909 372 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 SERPIND1P05546 499 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 GGT2P36268 569 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 SLC19A1P41440 591 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 IDH2P48735 452 aaKnown RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 MANFP55145 182 aaKnown RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 REEP5Q00765 189 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 ARHGAP19Q14CB8 494 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 MLF2Q15773 248 aaPredicted RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 C2orf27AQ580R0 203 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 GEMIN6Q8WXD5 167 aaKnown RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 SMPDL3AQ92484 453 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 C12orf66Q96MD2 445 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 FERD3LQ96RJ6 166 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 INSM2Q96T92 566 aaPredicted RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 WDR26Q9H7D7 661 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 TBC1D23Q9NUY8 699 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 KCNK6Q9Y257 313 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 CKAP5Q14008 2032 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 FAM227AF5H4B4 570 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 CAPN5O15484 640 aaPredicted RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 SEMA3DO95025 777 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 RPN2P04844 631 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 BCHEP06276 602 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 XCR1P46094 333 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 RXRGP48443 463 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 NUDT6P53370 316 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 VBP1P61758 197 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 MVKQ03426 396 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 SYT6Q5T7P8 510 aaPredicted RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 KXD1Q9BQD3 176 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 RSPO3Q9BXY4 272 aaPredicted RBP19.1■□□□□ 0.65
VPS53-201ENST00000291074 ACER3Q9NUN7 267 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 PCDHGA2Q9Y5H1 932 aa19.1■□□□□ 0.65
VPS53-201ENST00000291074 KMOO15229 486 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 PDPK1O15530 556 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 PRSS48Q7RTY5 328 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 P3H2Q8IVL5 708 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 PROX1Q92786 737 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 GTPBP3Q969Y2 492 aaKnown RBP19.09■□□□□ 0.65
VPS53-201ENST00000291074 SIGLEC11Q96RL6 698 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 PIP5K1AQ99755 562 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 TEX101Q9BY14 249 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 IMP3Q9NV31 184 aaKnown RBP19.09■□□□□ 0.65
VPS53-201ENST00000291074 SLC6A14Q9UN76 642 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 ZFR2Q9UPR6 939 aaKnown RBP19.09■□□□□ 0.65
VPS53-201ENST00000291074 WASHC1A8K0Z3 465 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 NDUFS4O43181 175 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 C21orf33P30042 268 aaPredicted RBP19.09■□□□□ 0.65
VPS53-201ENST00000291074 OPRL1P41146 370 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 SOX9P48436 509 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 DGKEP52429 567 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 C9orf50Q5SZB4 431 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 WASH2PQ6VEQ5 465 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 UBE3DQ7Z6J8 389 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 UBE2Q1Q7Z7E8 422 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 P2RY8Q86VZ1 359 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 NLGN4XQ8N0W4 816 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 UTP15Q8TED0 518 aaKnown RBP19.09■□□□□ 0.65
VPS53-201ENST00000291074 SLC38A5Q8WUX1 472 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 RPL3LQ92901 407 aaKnown RBP19.09■□□□□ 0.65
VPS53-201ENST00000291074 ALOXE3Q9BYJ1 711 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 CCNB1IP1Q9NPC3 277 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 GDE1Q9NZC3 331 aa19.09■□□□□ 0.65
VPS53-201ENST00000291074 TGFBR1P36897 503 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 ELOAQ14241 798 aaKnown RBP19.08■□□□□ 0.65
VPS53-201ENST00000291074 SAXO2Q658L1 398 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 C16orf87Q6PH81 154 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 ARMC8Q8IUR7 673 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 SVOPQ8N4V2 548 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 MACROD1Q9BQ69 325 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 PRDM8Q9NQV8 689 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 SIRT3Q9NTG7 399 aaPredicted RBP19.08■□□□□ 0.65
VPS53-201ENST00000291074 POFUT2Q9Y2G5 429 aa19.08■□□□□ 0.65
VPS53-201ENST00000291074 IGKV1-8A0A0C4DH67 115 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 ANXA8P13928 327 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 ITGA2P17301 1181 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 CXCR2P25025 360 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 PTGER1P34995 402 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 SEC13P55735 322 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms