RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SHISA3A0PJX4 238 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 RGS5O15539 181 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 PAX3P23760 479 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TNFSF8P32971 234 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 PTPN5P54829 565 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SNRPD1P62314 119 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 SRSF11Q05519 484 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 HSPB3Q12988 150 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 LIPKQ5VXJ0 399 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 RNF165Q6ZSG1 346 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 ANKRD53Q8N9V6 530 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 PLA2G15Q8NCC3 412 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 OR5AR1Q8NGP9 310 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SLC38A5Q8WUX1 472 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 CHAC2Q8WUX2 184 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 APOBEC4Q8WW27 367 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 ZFPM2Q8WW38 1151 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 EPYCQ99645 322 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 ZNF717Q9BY31 904 aaPredicted RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 PLA2G12AQ9BZM1 189 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SNTG1Q9NSN8 517 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 RPS6KA6Q9UK32 745 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 KIAA1549LQ6ZVL6 1849 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TRBC2A0A5B9 178 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 HEPACAM2A8MVW5 462 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 C8GP07360 202 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 GSTM1P09488 218 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SOX18P35713 384 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 XCR1P46094 333 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 CDK6Q00534 326 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TAP2Q03519 686 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 DUSP2Q05923 314 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 FADDQ13158 208 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 BCL2A1Q16548 175 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SYPL1Q16563 259 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TCTN3Q6NUS6 607 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 GDPD4Q6W3E5 623 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP28-201ENST00000003302 C11orf65Q8NCR3 313 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TM9SF4Q92544 642 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TMEM169Q96HH4 297 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 MRGPRX3Q96LB0 322 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 OR2A14Q96R47 310 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 F2RL3Q96RI0 385 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 AICDAQ9GZX7 198 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 LHX9Q9NQ69 397 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 FAM120CQ9NX05 1096 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 REV1Q9UBZ9 1251 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 RUVBL1Q9Y265 456 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 C4orf51C9J302 202 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 H0YIV9 168 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 MOSPD3O75425 235 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 CBLP22681 906 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 ALDH9A1P49189 494 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 UGT2B15P54855 530 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 MAP4K2Q12851 820 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SLC39A11Q8N1S5 342 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 PGBD3Q8N328 593 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SLC7A13Q8TCU3 470 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 C16orf78Q8WTQ4 265 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 C2orf15Q8WU43 125 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 ASB15Q8WXK1 588 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TBC1D20Q96BZ9 403 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 CDK5RAP1Q96SZ6 601 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 TEX10Q9NXF1 929 aaPredicted RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 EHD3Q9NZN3 535 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 MALT1Q9UDY8 824 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 DUSP12Q9UNI6 340 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 SLC5A10A0PJK1 596 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PIPSLA2A3N6 862 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 SLC35F4A4IF30 521 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 LALBAP00709 142 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 ELAVL2Q12926 359 aaKnown RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 VEZF1Q14119 521 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 HTR3DQ70Z44 454 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TTYH2Q9BSA4 534 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 BRWD1Q9NSI6 2320 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 ZFHX4Q86UP3 3567 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 CSO75390 466 aaKnown RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 C1orf105O95561 183 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TP53P04637 393 aaPredicted RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 SYN1P17600 705 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 CYP2A7P20853 494 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PCGF2P35227 344 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 VEPH1Q14D04 833 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TEAD2Q15562 447 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 SMU1Q2TAY7 513 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 FRMPD2BQ6IN97 320 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 GRHL2Q6ISB3 625 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PARS2Q7L3T8 475 aaKnown RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 SZRD1Q7Z422 152 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 ZNF605Q86T29 641 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 SVOPQ8N4V2 548 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 DEFB118Q96PH6 123 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TM9SF2Q99805 663 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 LGR4Q9BXB1 951 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 N6AMT1Q9Y5N5 214 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 KCNE3Q9Y6H6 103 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 V9GYH0 126 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PLPP1O14494 284 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms