RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SRFBP1Q8NEF9 429 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 NACC2Q96BF6 587 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 WBP1Q96G27 269 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 IMMP1LQ96LU5 166 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 IP6K3Q96PC2 410 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SERPINI1Q99574 410 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SLC29A3Q9BZD2 475 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 ACPTQ9BZG2 426 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 DDX31Q9H8H2 851 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 ZNF160Q9HCG1 818 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 PRM3Q9NNZ6 103 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 MLXIPLQ9NP71 852 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 KCNK9Q9NPC2 374 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 MID2Q9UJV3 735 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 FBXW2Q9UKT8 454 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SNX6Q9UNH7 406 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SLC12A4Q9UP95 1085 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 ATG4BQ9Y4P1 393 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 ASB4Q9Y574 426 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 PTGDR2Q9Y5Y4 395 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 CHD6Q8TD26 2715 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 IGSF10Q6WRI0 2623 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 CCDC88CQ9P219 2028 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 TMEM233B4DJY2 109 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 ITM2AO43736 263 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 PRMT3O60678 531 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 C8orf89P0DMQ9 161 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 ACPPP15309 386 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 TPP2P29144 1249 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 PPP2R1BP30154 601 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 RAP1GDS1P52306 607 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 HMGCS1Q01581 520 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 TGM3Q08188 693 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 KCNAB2Q13303 367 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 NSDHLQ15738 373 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 C18orf63Q68DL7 685 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 RIPOR1Q6ZS17 1223 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 CPEB2Q7Z5Q1 589 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 SCUBE1Q8IWY4 988 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 METTL4Q8N3J2 472 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 ZCCHC7Q8N3Z6 543 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 TMEM102Q8N9M5 508 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 FDCSPQ8NFU4 85 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 CHTF18Q8WVB6 975 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 CNDP1Q96KN2 507 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 MAGEB10Q96LZ2 347 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 PTCHD1Q96NR3 888 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 ARHGAP9Q9BRR9 750 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 NUDT9Q9BW91 350 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 C20orf27Q9GZN8 174 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 ZNF700Q9H0M5 742 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 TUBB1Q9H4B7 451 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 COPS7BQ9H9Q2 264 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 LYRM4Q9HD34 91 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 CCL27Q9Y4X3 112 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 CACNA1GO43497 2377 aa13.35□□□□□ -0.27
SHKBP1-217ENST00000598558 ATMQ13315 3056 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 A0A1W2PR48 441 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 NPHS1O60500 1241 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ULK1O75385 1050 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 SEC24DO94855 1032 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 SEMA3DO95025 777 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 HPP00738 406 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 KRT6AP02538 564 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 KRT6BP04259 564 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ENO1P06733 434 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 KLK1P06870 262 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 HMOX2P30519 316 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 HPDP32754 393 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 KRT6CP48668 564 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 SKP1P63208 163 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 RAE1P78406 368 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 PHEXP78562 749 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 UGT3A2Q3SY77 523 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 SFT2D3Q587I9 215 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 TTMPQ5BVD1 217 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 QSOX2Q6ZRP7 698 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 NDUFAF7Q7L592 441 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 CLNKQ7Z7G1 428 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 CUZD1Q86UP6 607 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 NUDCD3Q8IVD9 361 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ANKRD42Q8N9B4 389 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 SLC39A7Q92504 469 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ANKRD9Q96BM1 317 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 APIPQ96GX9 242 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 FER1L6-AS2Q96M78 137 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ROGDIQ9GZN7 287 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 BRF2Q9HAW0 419 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ZBTB20Q9HC78 741 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ATP13A2Q9NQ11 1180 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 PRDM9Q9NQV7 894 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 ZNF71Q9NQZ8 489 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 PRTFDC1Q9NRG1 225 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 STK38LQ9Y2H1 464 aa13.34□□□□□ -0.27
SHKBP1-217ENST00000598558 A0A088AWK7 358 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 TCRBV16S1A1N1A0A5B0 115 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 TMEM120BA0PK00 339 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ARHGAP10A1A4S6 786 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 SERTM1A2A2V5 107 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 A8MUA0 341 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms