RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TRIM63	Q969Q1	353 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FKBP10	Q96AY3	582 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EBPL	Q9BY08	206 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EVA1B	Q9NVM1	165 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	IL17C	Q9P0M4	197 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RPS6KA6	Q9UK32	745 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DTX4	Q9Y2E6	619 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DLGAP4	Q9Y2H0	992 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	BRWD1	Q9NSI6	2320 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ILVBL	A1L0T0	632 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ELOVL7	A1L3X0	281 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		M0R129	80 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PRMT5	O14744	637 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ANKRD28	O15084	1053 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FFAR2	O15552	330 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KLK8	O60259	260 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	NDUFS2	O75306	463 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SLC25A14	O95258	325 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CTSO	P43234	321 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KRT6C	P48668	564 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	STK19	P49842	368 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	UBE2I	P63279	158 aa	Known RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FOXM1	Q08050	763 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SOWAHC	Q53LP3	525 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CATSPERE	Q5SY80	951 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SPATC1	Q76KD6	591 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CYP4Z1	Q86W10	505 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		Q8N9G6	341 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LEMD2	Q8NC56	503 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF548	Q8NEK5	533 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PSMA8	Q8TAA3	256 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RAB2B	Q8WUD1	216 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	AKAP1	Q92667	903 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CLP1	Q92989	425 aa	Known RBP	11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ANAPC16	Q96DE5	110 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	P2RY12	Q9H244	342 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	IGFLR1	Q9H665	355 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ASB8	Q9H765	288 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF639	Q9UID6	485 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ENTPD4	Q9Y227	616 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	COL4A6	Q14031	1691 aa		11.14	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SCAMP2	O15127	329 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DNAJB6	O75190	326 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	VPS4B	O75351	444 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ANGPTL1	O95841	491 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EIF2S1	P05198	315 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LCK	P06239	509 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RHO	P08100	348 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DBT	P11182	482 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PPP3CC	P48454	512 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TTPA	P49638	278 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	METAP1	P53582	386 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TMBIM6	P55061	237 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TRAF3	Q13114	568 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ELOA	Q14241	798 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CYB5R2	Q6BCY4	276 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FDX2	Q6P4F2	183 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LILRA6	Q6PI73	481 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PAGE2	Q7Z2X7	111 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TMEM25	Q86YD3	366 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	HJURP	Q8NCD3	748 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	OR7A2P	Q8NGA2	310 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ULK4	Q96C45	1275 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RHBDF1	Q96CC6	855 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	FAM120B	Q96EK7	910 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZFYVE19	Q96K21	471 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RNF167	Q9H6Y7	350 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EVA1A	Q9H8M9	152 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ABCB10	Q9NRK6	738 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ABCB8	Q9NUT2	735 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DNMT3B	Q9UBC3	853 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MRPS7	Q9Y2R9	242 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	NIN	Q8N4C6	2090 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CHD5	Q8TDI0	1954 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		H0YAE9	185 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF701	M0R085	212 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	STX16	O14662	325 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	BCKDK	O14874	412 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MTX2	O75431	263 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CREG1	O75629	220 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	RNF224	P0DH78	156 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CD70	P32970	193 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PITPNB	P48739	271 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PPP5C	P53041	499 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ISL1	P61371	349 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DDX39B	Q13838	428 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KCNC3	Q14003	757 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CTF1	Q16619	201 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	THEM4	Q5T1C6	240 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	IDO2	Q6ZQW0	420 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF227	Q86WZ6	799 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	LSR	Q86X29	649 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MARC2	Q969Z3	335 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PHF21A	Q96BD5	680 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZSWIM3	Q96MP5	696 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KLHL25	Q9H0H3	589 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	IL26	Q9NPH9	171 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KLHL3	Q9UH77	587 aa		11.13	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PTPRS	Q13332	1948 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms