RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 XGP55808 180 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 GEMIN4P57678 1058 aaKnown RBP4.06□□□□□ -1.76
PRPF39-209ENST00000556353 KRTAP12-2P59991 146 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 KLC1Q07866 573 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 COG2Q14746 738 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 PCLAFQ15004 111 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 MMD2Q8IY49 270 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 LGI2Q8N0V4 545 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 METTL4Q8N3J2 472 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 NKAIN3Q8N8D7 197 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 THAP8Q8NA92 274 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 ATP8B4Q8TF62 1192 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 SEPHS2Q99611 448 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 LPAR4Q99677 370 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 TREX2Q9BQ50 279 aaPredicted RBP4.06□□□□□ -1.76
PRPF39-209ENST00000556353 XPO4Q9C0E2 1151 aaKnown RBP4.06□□□□□ -1.76
PRPF39-209ENST00000556353 B3GAT2Q9NPZ5 323 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 HAUS2Q9NVX0 235 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 DCAF16Q9NXF7 216 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 HOXC10Q9NYD6 342 aa4.06□□□□□ -1.76
PRPF39-209ENST00000556353 IGLV3-10A0A075B6K4 115 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 ARPC2O15144 300 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 GPAA1O43292 621 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 BCL2L11O43521 198 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 NMT2O60551 498 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 LETM1O95202 739 aaPredicted RBP4.05□□□□□ -1.76
PRPF39-209ENST00000556353 SNAI1O95863 264 aaPredicted RBP4.05□□□□□ -1.76
PRPF39-209ENST00000556353 PGK1P00558 417 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 IGHV2-70P01814 119 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 THEGLP0DJG4 465 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 RPL35AP18077 110 aaKnown RBP4.05□□□□□ -1.76
PRPF39-209ENST00000556353 CCNA1P78396 465 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 CHAF1BQ13112 559 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 SHHQ15465 462 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 PHKG1Q16816 387 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 SBK1Q52WX2 424 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 MFSD14CQ5VZR4 134 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 MTERF4Q7Z6M4 381 aaKnown RBP4.05□□□□□ -1.76
PRPF39-209ENST00000556353 ZNF595Q8IYB9 648 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 TEX9Q8N6V9 391 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 SLC37A3Q8NCC5 494 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 APPL2Q8NEU8 664 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 BADQ92934 168 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 C4orf45Q96LM5 186 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 LRRCC1Q9C099 1032 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 DCTPP1Q9H773 170 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 SLC35C2Q9NQQ7 365 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 CPSF2Q9P2I0 782 aaKnown RBP4.05□□□□□ -1.76
PRPF39-209ENST00000556353 RIF1Q5UIP0 2472 aaKnown RBP4.05□□□□□ -1.76
PRPF39-209ENST00000556353 RALGAPA2Q2PPJ7 1873 aa4.05□□□□□ -1.76
PRPF39-209ENST00000556353 GRIN2DO15399 1336 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 UMODL1Q5DID0 1318 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 MYH9P35579 1960 aaKnown RBP4.04□□□□□ -1.76
PRPF39-209ENST00000556353 ACOD1A6NK06 481 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 F5H6K3 240 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 O00370 1275 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 TFECO14948 347 aaPredicted RBP4.04□□□□□ -1.76
PRPF39-209ENST00000556353 TEX28O15482 410 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 RNF113AO15541 343 aaKnown RBP4.04□□□□□ -1.76
PRPF39-209ENST00000556353 FIBPO43427 364 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 CSH1P0DML2 217 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 CSH2P0DML3 217 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 HOXD13P35453 343 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 MAGEA8P43361 318 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 RXRGP48443 463 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 SNAP25P60880 206 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 CNTN2Q02246 1040 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 KLRC3Q07444 240 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 DMTNQ08495 405 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 HSPB3Q12988 150 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 CDH18Q13634 790 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 NTRK2Q16620 822 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 TTC31Q49AM3 519 aaPredicted RBP4.04□□□□□ -1.76
PRPF39-209ENST00000556353 FILIP1LQ4L180 1135 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 HIGD2BQ4VC39 106 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 SNRNP48Q6IEG0 339 aaKnown RBP4.04□□□□□ -1.76
PRPF39-209ENST00000556353 LEKR1Q6ZMV7 388 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 SLC47A2Q86VL8 602 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 OR10S1Q8NGN2 331 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 C11orf45Q8TAV5 145 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 SKA1Q96BD8 255 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 SLF1Q9BQI6 1058 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 LZTS2Q9BRK4 669 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 TEX13BQ9BXU2 312 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 HOXD1Q9GZZ0 328 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 SLC38A10Q9HBR0 1119 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 GIMAP4Q9NUV9 329 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 GPR83Q9NYM4 423 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 EPS15L1Q9UBC2 864 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 TBX21Q9UL17 535 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 WIPI2Q9Y4P8 454 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 R4GN57 208 aa4.04□□□□□ -1.76
PRPF39-209ENST00000556353 COL4A6Q14031 1691 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 GVINP1Q7Z2Y8 2422 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 A0A0D9SFI3 127 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 FSD2A1L4K1 749 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 NEMP2A6NFY4 417 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 SNURFLB1AK76 121 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 FPGTO14772 594 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 CPLX1O14810 134 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms