RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RAPSNQ13702 412 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 MPP2Q14168 576 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ABRAXAS2Q15018 415 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 PCOLCEQ15113 449 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 C10orf62Q5T681 223 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ZCCHC23Q6ZST2 131 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ANKRD37Q7Z713 158 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 CLEC1AQ8NC01 280 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 PLPP5Q8NEB5 264 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ABHD17AQ96GS6 310 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 PKNOX2Q96KN3 472 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 PTCHD1Q96NR3 888 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 MRPL1Q9BYD6 325 aaKnown RBP13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ADNPQ9H2P0 1102 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 TMBIM4Q9HC24 238 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ZNF160Q9HCG1 818 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 KCMF1Q9P0J7 381 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 FBXW2Q9UKT8 454 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 SLC12A4Q9UP95 1085 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ACTL7BQ9Y614 415 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 NBASA2RRP1 2371 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 IGHV1-45A0A0A0MS14 117 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 A0A1W2PQ72 361 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 MKRN2OSH3BPM6 223 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 K7EM74 188 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 CYR61O00622 381 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 TMPRSS11DO60235 418 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 PRMT3O60678 531 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 CEACAM4O75871 244 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 SEMA3DO95025 777 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 HPP00738 406 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 GBAP04062 536 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 PRB1P04280 392 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 BPGMP07738 259 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 CHN1P15882 459 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 NR1D1P20393 614 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 SERPINB4P48594 390 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 Q0VFX4 171 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 ASPHQ12797 758 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 SLAMF1Q13291 335 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 NSDHLQ15738 373 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 SCIMPQ6UWF3 145 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 QSOX2Q6ZRP7 698 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 CPEB2Q7Z5Q1 589 aaKnown RBP13.27□□□□□ -0.29
PTCH1-226ENST00000553011 PARP9Q8IXQ6 854 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 GALNT16Q8N428 558 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 LSM14AQ8ND56 463 aaKnown RBP13.27□□□□□ -0.29
PTCH1-226ENST00000553011 FDCSPQ8NFU4 85 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 C9orf43Q8TAL5 461 aaPredicted RBP13.27□□□□□ -0.29
PTCH1-226ENST00000553011 VPS50Q96JG6 964 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 LYRM4Q9HD34 91 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 KCNK9Q9NPC2 374 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 ATP13A2Q9NQ11 1180 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 NECTIN3Q9NQS3 549 aa13.27□□□□□ -0.29
PTCH1-226ENST00000553011 ZNF71Q9NQZ8 489 aaPredicted RBP13.27□□□□□ -0.29
PTCH1-226ENST00000553011 ARGLU1Q9NWB6 273 aaPredicted RBP13.27□□□□□ -0.29
PTCH1-226ENST00000553011 A0A0A6YYD5 115 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 NSG1A0A0A6YYJ2 146 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 WDR91A4D1P6 747 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 TGFBR3LH3BV60 316 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 PCDH17O14917 1159 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ULK1O75385 1050 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 SEC24DO94855 1032 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 PDGFAP04085 211 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 CHRNGP07510 517 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 CELA2AP08217 269 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 CPN2P22792 545 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ITGA3P26006 1051 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 SERPINB3P29508 390 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 TSFMP43897 325 aaKnown RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ARFIP1P53367 373 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 HNRNPH2P55795 449 aaKnown RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 AIMP2Q13155 320 aaKnown RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 SFT2D3Q587I9 215 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 NDUFAF7Q7L592 441 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 CLNKQ7Z7G1 428 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 NUDT13Q86X67 352 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 SCUBE1Q8IWY4 988 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 CPAMD8Q8IZJ3 1885 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 METTL4Q8N3J2 472 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ZCCHC7Q8N3Z6 543 aaKnown RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 EFCAB3Q8N7B9 438 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ADAMTS18Q8TE60 1221 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 TLCD1Q96CP7 247 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 CNDP1Q96KN2 507 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 WDR77Q9BQA1 342 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 SLC25A23Q9BV35 468 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 NUDT9Q9BW91 350 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ACPTQ9BZG2 426 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 ZNF700Q9H0M5 742 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 STMN4Q9H169 189 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 DDX31Q9H8H2 851 aaKnown RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 BRF2Q9HAW0 419 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 PRDM9Q9NQV7 894 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 PRTFDC1Q9NRG1 225 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 C19orf25Q9UFG5 118 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 TUBD1Q9UJT1 453 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 MRPS33Q9Y291 106 aaKnown RBP13.26□□□□□ -0.29
PTCH1-226ENST00000553011 TP53TG5Q9Y2B4 290 aa13.26□□□□□ -0.29
PTCH1-226ENST00000553011 MMACHCQ9Y4U1 282 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms