RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PLXND1Q9Y4D7 1925 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 PRAMEF33A0A0G2JMD5 474 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 TRBC2A0A5B9 178 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 NT5C1B-RDH14C9J2C7 533 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 J3KTA2 159 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 FOXE1O00358 373 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 PRAMEF10O60809 474 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 CSO75390 466 aaKnown RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 ABLIM3O94929 683 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 C6orf47O95873 294 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 CATP04040 527 aaKnown RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 YES1P07947 543 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 FURINP09958 794 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 OSMP13725 252 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 ZNF8P17098 575 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 MLLT3P42568 568 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 GATMP50440 423 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 BNC1Q01954 994 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 CHRNEQ04844 493 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 LMAN2Q12907 356 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 ILKQ13418 452 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 C1DQ13901 141 aaKnown RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 SF1Q15637 639 aaKnown RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 TBRG1Q3YBR2 411 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 GLYR1Q49A26 553 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 C12orf73Q69YU5 71 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 RGMBQ6NW40 437 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 MED27Q6P2C8 311 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 XKRXQ6PP77 449 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 SERPINA13PQ6UXR4 307 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 ZNF852Q6ZMS4 543 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 GATAD2AQ86YP4 633 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 IFNL1Q8IU54 200 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.37□□□□□ -1.07
TDP1-204ENST00000545686 RDH10Q8IZV5 341 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 CPXM2Q8N436 756 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 GDPD1Q8N9F7 314 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 PROKR2Q8NFJ6 384 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 BCL7CQ8WUZ0 217 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 BTN2A2Q8WVV5 523 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 SLC7A6Q92536 515 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 PPCDCQ96CD2 204 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 TIFAQ96CG3 184 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 WDR34Q96EX3 536 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 RNF170Q96K19 258 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 MSLNLQ96KJ4 702 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 NEDD4LQ96PU5 975 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 OR4K3Q96R72 315 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 ARHGAP39Q9C0H5 1083 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 MARCH7Q9H992 704 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 NFKBIL1Q9UBC1 381 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 MBD1Q9UIS9 605 aaPredicted RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 LSM7Q9UK45 103 aaKnown RBP8.37□□□□□ -1.07
TDP1-204ENST00000545686 OGDHLQ9ULD0 1010 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 LRFN2Q9ULH4 789 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 SLC6A14Q9UN76 642 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 SSR3Q9UNL2 185 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 MGAT4BQ9UQ53 548 aa8.37□□□□□ -1.07
TDP1-204ENST00000545686 A0A1W2PQ09 198 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 KRT87PA6NCN2 255 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 CCDC182A6NF36 153 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 SGTAO43765 313 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 TPST2O60704 377 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 GUCY1B2O75343 617 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 ENTPD6O75354 484 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 TRIM3O75382 744 aaPredicted RBP8.36□□□□□ -1.07
TDP1-204ENST00000545686 ALX3O95076 343 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 GASTP01350 101 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 ALPPP05187 535 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 SRCP12931 536 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 POU2F1P14859 743 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 ZNF30P17039 623 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 CHI3L1P36222 383 aaPredicted RBP8.36□□□□□ -1.07
TDP1-204ENST00000545686 ACLYP53396 1101 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 RPS13P62277 151 aaKnown RBP8.36□□□□□ -1.07
TDP1-204ENST00000545686 HYAL2Q12891 473 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 NAE1Q13564 534 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 TP53BP2Q13625 1128 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 LARS2Q15031 903 aaKnown RBP8.36□□□□□ -1.07
TDP1-204ENST00000545686 C22orf39Q6P5X5 142 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 LAX1Q8IWV1 398 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 RAVER1Q8IY67 606 aaKnown RBP8.36□□□□□ -1.07
TDP1-204ENST00000545686 VWA5B2Q8N398 1253 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 NANOGP1Q8N7R0 232 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 PSD4Q8NDX1 1056 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 TET1Q8NFU7 2136 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 ZNF461Q8TAF7 563 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 FIBINQ8TAL6 211 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 APOBEC4Q8WW27 367 aaKnown RBP8.36□□□□□ -1.07
TDP1-204ENST00000545686 SLC25A46Q96AG3 418 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 MED8Q96G25 268 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 DHRS1Q96LJ7 313 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 RIPOR3Q96MK2 946 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 UCK2Q9BZX2 261 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 MCOLN1Q9GZU1 580 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 SYNDIG1Q9H7V2 258 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 TBC1D14Q9P2M4 693 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 HCSTQ9UBK5 93 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 REV1Q9UBZ9 1251 aa8.36□□□□□ -1.07
TDP1-204ENST00000545686 MUTYHQ9UIF7 546 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms