RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 FPGSQ05932 587 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PUM1Q14671 1186 aaKnown RBP eCLIP8.45□□□□□ -1.061e-6■□□□□ 9.4
YBX3-208ENST00000540447 FCN2Q15485 313 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CGB2Q6NT52 195 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 DPY19L2P1Q6NXN4 242 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SPPL2BQ8TCT7 592 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CORO2AQ92828 525 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 TAAR1Q96RJ0 339 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CNTNAP3Q9BZ76 1288 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 IMP3Q9NV31 184 aaKnown RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 MIOSQ9NXC5 875 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SMPD4Q9NXE4 827 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PCDHB7Q9Y5E2 793 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 A0A0A6YYH2 397 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 BTBD17A6NE02 478 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 A6NJ64 397 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 J3KR12 359 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 GATCO43716 136 aaKnown RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 IL1BP01584 269 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 GCAP28676 217 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PROX2Q3B8N5 592 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 HACD4Q5VWC8 232 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ZNF101Q8IZC7 436 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SLC38A6Q8IZM9 456 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 OR6M1Q8NGM8 313 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 HAS1Q92839 578 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 RELTQ969Z4 430 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MASTLQ96GX5 879 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ZBTB45Q96K62 511 aaPredicted RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 TOLLIPQ9H0E2 274 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CALML5Q9NZT1 146 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CASZ1Q86V15 1759 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 GGT3PA6NGU5 568 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 GPR89AB7ZAQ6 455 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 QSOX1O00391 747 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 USP17L7P0C7H9 530 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 GPR89BP0CG08 455 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 HOXD8P13378 290 aaPredicted RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 GGT2P36268 569 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MRPS10P82664 201 aaKnown RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 PXKQ7Z7A4 578 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 IQCHQ86VS3 1027 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 TMC8Q8IU68 726 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SYT14Q8NB59 555 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PLPP5Q8NEB5 264 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 FAM110BQ8TC76 370 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ESAMQ96AP7 390 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ULBP1Q9BZM6 244 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MINDY3Q9H8M7 445 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MAN2C1Q9NTJ4 1040 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CNTN3Q9P232 1028 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 UXTQ9UBK9 157 aaPredicted RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 TNS3Q68CZ2 1445 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 LRIT2A6NDA9 550 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 D6RAR5 112 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SCN2BO60939 215 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CPT2P23786 658 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PAX6P26367 422 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MAPK14Q16539 360 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 DUOXA1Q1HG43 343 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CYBRD1Q53TN4 286 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 FAM199XQ6PEV8 388 aaPredicted RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 OR8J3Q8NGG0 315 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SLC35B2Q8TB61 432 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ZFPM2Q8WW38 1151 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SMPDL3AQ92484 453 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 LENG9Q96B70 501 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 LRFN5Q96NI6 719 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ORAI2Q96SN7 254 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PLCXD1Q9NUJ7 323 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 METP08581 1390 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 RDH16O75452 317 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ESR1P03372 595 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 BMP1P13497 986 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CTPS1P17812 591 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 S100A11P31949 105 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 RAB13P51153 203 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CRYZQ08257 329 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 SPIN3Q5JUX0 258 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 B3GNT9Q6UX72 402 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 GAREM2Q75VX8 874 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 TXNRD3Q86VQ6 643 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CPNE8Q86YQ8 564 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 BRSK1Q8TDC3 778 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 PITHD1Q9GZP4 211 aaPredicted RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 PIGMQ9H3S5 423 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 FBRSL1Q9HCM7 1045 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 GALNT9Q9HCQ5 603 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 RBFOX1Q9NWB1 397 aaKnown RBP8.44□□□□□ -1.06
YBX3-208ENST00000540447 HPGDSO60760 199 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 HSD17B1P14061 328 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 PRPS1L1P21108 318 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 CLCN7P51798 805 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 GTF2BQ00403 316 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 MGAT3Q09327 533 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 GRIK2Q13002 908 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 LRRC26Q2I0M4 334 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 TTLL10Q6ZVT0 673 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 ZFP41Q8N8Y5 198 aa8.44□□□□□ -1.06
YBX3-208ENST00000540447 NKX2-3Q8TAU0 364 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms