RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 Q8N402 240 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 FBXO32Q969P5 355 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 NELL2Q99435 816 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 PARK7Q99497 189 aaKnown RBP16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 C1QTNF7Q9BXJ2 289 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 CRISPLD1Q9H336 500 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 TRPM7Q96QT4 1865 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 FAM240BA0A1B0GVZ2 78 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 LYRM1O43325 122 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 FZD6O60353 706 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 SLC22A5O76082 557 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 GADD45GO95257 159 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 TRBC1P01850 177 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 ACRV1P26436 265 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 AOAHP28039 575 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 SLC6A12P48065 614 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 CDH4P55283 916 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 C1DQ13901 141 aaKnown RBP16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 TJAP1Q5JTD0 557 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 PAQR6Q6TCH4 344 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 ABI3BPQ7Z7G0 1075 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 NPAS3Q8IXF0 933 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 OR8H1Q8NGG4 311 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 FUBP3Q96I24 572 aaKnown RBP eCLIP16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 GPR137Q96N19 417 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 NMNAT1Q9HAN9 279 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 DNAJC27Q9NZQ0 273 aa16.36■□□□□ 0.21
SQSTM1-211ENST00000506690 SCN8AQ9UQD0 1980 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 TRBV5-4A0A0C4DH59 114 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 GABRR3A8MPY1 467 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 ORC5O43913 435 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 TNFRSF21O75509 655 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 SCO1O75880 301 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 CPEP16870 476 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 POU1F1P28069 291 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 SDC2P34741 201 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 PER3P56645 1201 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 POU6F2P78424 691 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 MADCAM1Q13477 382 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 ANGPT1Q15389 498 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 ZNF730Q6ZMV8 503 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 IL17RCQ8NAC3 791 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 CDC26Q8NHZ8 85 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 GEMIN6Q8WXD5 167 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 AP3S1Q92572 193 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 C11orf24Q96F05 449 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 C17orf62Q9BQA9 187 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 KATNB1Q9BVA0 655 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 C11orf16Q9NQ32 467 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 PCDHB8Q9UN66 801 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 RPL36Q9Y3U8 105 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 PCDHB9Q9Y5E1 797 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 DNAH12Q6ZR08 3092 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 CBX4O00257 560 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 OR7A10O76100 309 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 ZNF91Q05481 1191 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 TWF1Q12792 350 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 MRPL28Q13084 256 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 GRB14Q14449 540 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 CYP27C1Q4G0S4 372 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 COX20Q5RI15 118 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 CPTPQ5TA50 214 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 PXDC1Q5TGL8 231 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 PLEKHH3Q7Z736 793 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 TLK2Q86UE8 772 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 ADGRG2Q8IZP9 1017 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 MAGEB10Q96LZ2 347 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 KCTD7Q96MP8 289 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 KCNJ15Q99712 375 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 RETREG1Q9H6L5 497 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 GALNT9Q9HCQ5 603 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 B3GAT2Q9NPZ5 323 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 ITM2BQ9Y287 266 aa16.35■□□□□ 0.21
SQSTM1-211ENST00000506690 PLOD3O60568 738 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 RFPL3O75679 317 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 ALPIP09923 528 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 ETFAP13804 333 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 IRS1P35568 1242 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 CRATP43155 626 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 STK19P49842 368 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 DGKEP52429 567 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 RPS24P62847 133 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 PPP3R1P63098 170 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 TAF10Q12962 218 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 GANABQ14697 944 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 TEX261Q6UWH6 196 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 CAMKMTQ7Z624 323 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 PDZD3Q86UT5 571 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 TMEM145Q8NBT3 493 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 VPS37AQ8NEZ2 397 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 AKAP1Q92667 903 aaKnown RBP eCLIP16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 B3GNT4Q9C0J1 378 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 VPS29Q9UBQ0 182 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 REV1Q9UBZ9 1251 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 ZNF282Q9UDV7 671 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 STOML2Q9UJZ1 356 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 RUVBL1Q9Y265 456 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 U3KQ87 197 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 PRAMEF33A0A0G2JMD5 474 aa16.34■□□□□ 0.21
SQSTM1-211ENST00000506690 TRIM77I1YAP6 450 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms