RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 NUS1Q96E22 293 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 IL23AQ9NPF7 189 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 C11orf16Q9NQ32 467 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 RPS6KA6Q9UK32 745 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 PIPSLA2A3N6 862 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 RTCAO00442 366 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 TPST2O60704 377 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 LILRB5O75023 590 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 FGBP02675 491 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 BMPR1AP36894 532 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 TAS2R50P59544 299 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 KCNJ10P78508 379 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 ST3GAL4Q11206 333 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 ZMAT1Q5H9K5 638 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 ARMCX4Q5H9R4 360 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 MMAAQ8IVH4 418 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 OR5AR1Q8NGP9 310 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 STARD8Q92502 1023 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 OTUB1Q96FW1 271 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 COQ10AQ96MF6 247 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 MS4A12Q9NXJ0 267 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 NAALAD2Q9Y3Q0 740 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 PCDH17O14917 1159 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 SUV39H1O43463 412 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 POP7O75817 140 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 UPK1BO75841 260 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 SEMG1P04279 462 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 DDX6P26196 483 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 SOAT1P35610 550 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 PPP5CP53041 499 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 TAP2Q03519 686 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 C2orf80Q0P641 193 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 EXOC3L2Q2M3D2 409 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 CCDC92Q53HC0 331 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 CCBE1Q6UXH8 406 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 OLIG3Q7RTU3 272 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 TSEN54Q7Z6J9 526 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 GPR65Q8IYL9 337 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF675Q8TD23 568 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 VMP1Q96GC9 406 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 PRRG3Q9BZD7 231 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 IMPAD1Q9NX62 359 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 C5AR2Q9P296 337 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 IRAK3Q9Y616 596 aa15.8■□□□□ 0.12
CCDC88B-210ENST00000494566 SERTM1A2A2V5 107 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 EFCAB14O75071 495 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CTSKP43235 329 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 TSTQ16762 297 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 RFX4Q33E94 735 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 SVOPQ8N4V2 548 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 NFKBIDQ8NI38 313 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 C7orf34Q96L11 122 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 SLC35A5Q9BS91 424 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CHST8Q9H2A9 424 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 DUSP12Q9UNI6 340 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 ASF1AQ9Y294 204 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 DYRK1BQ9Y463 629 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 IL1RNP18510 177 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 DBPQ10586 325 aaPredicted RBP15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 IQCCQ4KMZ1 466 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 MSANTD1Q6ZTZ1 278 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 FAM124AQ86V42 546 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CYP4Z2PQ8N1L4 340 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 METTL4Q8N3J2 472 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CELF5Q8N6W0 485 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 SLC38A4Q969I6 547 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 NEDD4LQ96PU5 975 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 TP63Q9H3D4 680 aaPredicted RBP15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CERS4Q9HA82 394 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 BRF2Q9HAW0 419 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CTPS2Q9NRF8 586 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 EHD3Q9NZN3 535 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 ANKMY1Q9P2S6 941 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 OSGIN1Q9UJX0 560 aa15.79■□□□□ 0.12
CCDC88B-210ENST00000494566 CXorf51AA0A1B0GTR3 108 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 PRMT3O60678 531 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 KLHL18O94889 574 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 S100A5P33763 92 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 SOX3P41225 446 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 WASP42768 502 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 SPIN4Q56A73 249 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 C9orf64Q5T6V5 341 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 PRSS48Q7RTY5 328 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 VPS37AQ8NEZ2 397 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 OR10G2Q8NGC3 310 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 TMEM203Q969S6 136 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF707Q96C28 371 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 CNPPD1Q9BV87 410 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 CDADC1Q9BWV3 514 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 ABCG4Q9H172 646 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 DMRT3Q9NQL9 472 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 MARK1Q9P0L2 795 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 DKK3Q9UBP4 350 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 TRIOO75962 3097 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 CEP290O15078 2479 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 QSOX1O00391 747 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 KIAA0355O15063 1070 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 STATHP02808 62 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 PSMB5P28074 263 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 MVDP53602 400 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms