RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	REPS1	Q96D71	796 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZHX1-C8orf76	Q96EF9	292 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	LRIG1	Q96JA1	1093 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	DACH2	Q96NX9	599 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	OR5M11	Q96RB7	305 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	C6orf106	Q9H6K1	298 aa	Predicted RBP	11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	SGK2	Q9HBY8	427 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	NCDN	Q9UBB6	729 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	CEP192	Q8TEP8	1941 aa		11.12	□□□□□ -0.63
BRCA1-222	ENST00000493919	TCRBV7S2A1N4T	A0A589	114 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919		H3BMQ9	156 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ITGB1BP1	O14713	200 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	AKR7A2	O43488	359 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TNFRSF21	O75509	655 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PTTG1	O95997	202 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	OTC	P00480	354 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SNRNP70	P08621	437 aa	Known RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ADRB3	P13945	408 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	MSH3	P20585	1137 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PGM1	P36871	562 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	MAPK8	P45983	427 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ARHGAP8	P85298	464 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	RHD	Q02161	417 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	GRB7	Q14451	532 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	GRM3	Q14832	879 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TIGD6	Q17RP2	521 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZIK1	Q3SY52	487 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TOR1AIP1	Q5JTV8	583 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	LYSMD4	Q5XG99	296 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ANKS6	Q68DC2	871 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	LAIR1	Q6GTX8	287 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZCCHC12	Q6PEW1	402 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	NPSR1	Q6W5P4	371 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TMC3	Q7Z5M5	1100 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SLC41A1	Q8IVJ1	513 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PPIL6	Q8IXY8	311 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SUMF1	Q8NBK3	374 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PTCD3	Q96EY7	689 aa	Known RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SEMA3C	Q99985	751 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PTDSS2	Q9BVG9	487 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	MND1	Q9BWT6	205 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	NPL	Q9BXD5	320 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	GLOD4	Q9HC38	313 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	DUSP22	Q9NRW4	184 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	IMPAD1	Q9NX62	359 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	COQ3	Q9NZJ6	369 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	RUVBL2	Q9Y230	463 aa	Known RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	NAALAD2	Q9Y3Q0	740 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919		V9GYQ6	96 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	CFAP54	Q96N23	3096 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3D	A0A087WVF3	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919		A0A087WXM4	84 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3I	A0A087WXS9	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3E	A0A087X179	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3K	A0A087X1G2	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3F	A6NER0	549 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3L	B9A6J9	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	NEMP1	O14524	444 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	LDLRAD4	O15165	306 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PLRG1	O43660	514 aa	Known RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SOX30	O94993	753 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ATE1	O95260	518 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	BCL10	O95999	233 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SERPINA5	P05154	406 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SBK2	P0C263	348 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3H	P0C7X1	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	CR2	P20023	1033 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	HLA-DPA1	P20036	260 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	IL12A	P29459	219 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PSPH	P78330	225 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	IFI35	P80217	286 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	BNIP3	Q12983	259 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZNF674	Q2M3X9	581 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	AP5B1	Q2VPB7	878 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SLC9B1	Q4ZJI4	515 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	HSD17B12	Q53GQ0	312 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3G	Q6DHY5	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3C	Q6IPX1	549 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	CGB2	Q6NT52	195 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	DCXR	Q7Z4W1	244 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SLC13A5	Q86YT5	568 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TBC1D3	Q8IZP1	549 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TEX26	Q8N6G2	289 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZNF781	Q8N8C0	355 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZNF248	Q8NDW4	579 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	OR2T34	Q8NGX1	318 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZFAND1	Q8TCF1	268 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	BLOC1S5	Q8TDH9	187 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ATG4A	Q8WYN0	398 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	SH3YL1	Q96HL8	342 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	TMEM41A	Q96HV5	264 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	CPEB1	Q9BZB8	566 aa	Known RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	MIR1-1HG	Q9H1L0	117 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	PCDHGC4	Q9Y5F7	938 aa		11.11	□□□□□ -0.63
BRCA1-222	ENST00000493919	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	11.1	□□□□□ -0.63
BRCA1-222	ENST00000493919	RGS5	O15539	181 aa		11.1	□□□□□ -0.63
BRCA1-222	ENST00000493919	PRKD3	O94806	890 aa		11.1	□□□□□ -0.63

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