RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RUNX2Q13950 521 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 C6orf136Q5SQH8 315 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 MLIPQ5VWP3 458 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 NOXRED1Q6NXP6 359 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 PRMT9Q6P2P2 845 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 ACAD11Q709F0 780 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 EFCAB3Q8N7B9 438 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 PROKR1Q8TCW9 393 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 FGF11Q92914 225 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 MVB12AQ96EY5 273 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 PEX11GQ96HA9 241 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 RILPQ96NA2 401 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 TMEM120AQ9BXJ8 343 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 NSRP1Q9H0G5 558 aaKnown RBP16.26■□□□□ 0.19
LIME1-208ENST00000493265 CHST8Q9H2A9 424 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 THSD1Q9NS62 852 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 IFT80Q9P2H3 777 aaPredicted RBP16.26■□□□□ 0.19
LIME1-208ENST00000493265 TRPC4Q9UBN4 977 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 PCDHGA7Q9Y5G6 932 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 H0YIG0 161 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 TMPRSS11DO60235 418 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 TGDSO95455 350 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 FAM58BPP0C7Q3 252 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 ALOX15P16050 662 aaPredicted RBP16.25■□□□□ 0.19
LIME1-208ENST00000493265 LBPP18428 481 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 DRD4P21917 467 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 PRPH2P23942 346 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 IL23RQ5VWK5 629 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 PRSS58Q8IYP2 241 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 CA13Q8N1Q1 262 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 OR51Q1Q8NH59 317 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 CLHC1Q8NHS4 586 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 MARK4Q96L34 752 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 MAPKAP1Q9BPZ7 522 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 ELAC2Q9BQ52 826 aaKnown RBP16.25■□□□□ 0.19
LIME1-208ENST00000493265 DDX31Q9H8H2 851 aaKnown RBP16.25■□□□□ 0.19
LIME1-208ENST00000493265 GPN3Q9UHW5 284 aaPredicted RBP16.25■□□□□ 0.19
LIME1-208ENST00000493265 PADI1Q9ULC6 663 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 DLGAP4Q9Y2H0 992 aa16.25■□□□□ 0.19
LIME1-208ENST00000493265 A0A0A6YYD5 115 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 E9PBE3 544 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 FAM227AF5H4B4 570 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 STMND1H3BQB6 276 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 KLHL41O60662 606 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 RAD1O60671 282 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 TSFMP43897 325 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 XCR1P46094 333 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 ARFIP1P53367 373 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 LIM2P55344 173 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 HNRNPH2P55795 449 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 CXADRP78310 365 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 DSG2Q14126 1118 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 ERV3-1Q14264 604 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 KIAA0040Q15053 153 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 LSM12Q3MHD2 195 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 TBC1D25Q3MII6 688 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 MFSD4BQ5TF39 518 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 ZNF385CQ66K41 422 aaPredicted RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 NIPAL1Q6NVV3 410 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 SHISA6Q6ZSJ9 500 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 LARP4Q71RC2 724 aaKnown RBP eCLIP16.24■□□□□ 0.19
LIME1-208ENST00000493265 COX15Q7KZN9 410 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 GPR155Q7Z3F1 870 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 MTERF4Q7Z6M4 381 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 NLGN4XQ8N0W4 816 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 LIX1Q8N485 282 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 FAM47BQ8NA70 645 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 NLGN4YQ8NFZ3 816 aaPredicted RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 NAF1Q96HR8 494 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 SPRY4Q9C004 299 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 B3GNT4Q9C0J1 378 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 KCNK13Q9HB14 408 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 TCF7L2Q9NQB0 619 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 SLC22A11Q9NSA0 550 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 CTSFQ9UBX1 484 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 BAIAP2L1Q9UHR4 511 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 MCM8Q9UJA3 840 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 ADAM29Q9UKF5 820 aa16.24■□□□□ 0.19
LIME1-208ENST00000493265 EIF3LQ9Y262 564 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 FLNBO75369 2602 aaKnown RBP16.24■□□□□ 0.19
LIME1-208ENST00000493265 C9J4A7 227 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 PSMD12O00232 456 aaPredicted RBP16.23■□□□□ 0.19
LIME1-208ENST00000493265 B4GALT2O60909 372 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 PRKRAO75569 313 aaKnown RBP16.23■□□□□ 0.19
LIME1-208ENST00000493265 CDC123O75794 336 aaPredicted RBP16.23■□□□□ 0.19
LIME1-208ENST00000493265 DXOO77932 396 aaKnown RBP16.23■□□□□ 0.19
LIME1-208ENST00000493265 SCELO95171 688 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 PIM1P11309 404 aaPredicted RBP16.23■□□□□ 0.19
LIME1-208ENST00000493265 RNH1P13489 461 aaKnown RBP16.23■□□□□ 0.19
LIME1-208ENST00000493265 CPN2P22792 545 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 MAPK1P28482 360 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 ARFIP2P53365 341 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 FOXL2P58012 376 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 TAS2R50P59544 299 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 ERVK-8P63133 956 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 TLE3Q04726 772 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 EMX2Q04743 252 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 TUBB8Q3ZCM7 444 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 TMEM198Q66K66 360 aa16.23■□□□□ 0.19
LIME1-208ENST00000493265 IGF2-ASQ6U949 168 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms