RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 RPS27LQ71UM5 84 aaKnown RBP13.35□□□□□ -0.27
VAMP4-203ENST00000474047 UBE3DQ7Z6J8 389 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 TMEM151AQ8N4L1 468 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 OR4F6Q8NGB9 312 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 M1APQ8TC57 530 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 TRPC4APQ8TEL6 797 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 ZNF483Q8TF39 744 aaPredicted RBP13.35□□□□□ -0.27
VAMP4-203ENST00000474047 MZB1Q8WU39 189 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 LYRM4Q9HD34 91 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 NECTIN3Q9NQS3 549 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 PNO1Q9NRX1 252 aaKnown RBP13.35□□□□□ -0.27
VAMP4-203ENST00000474047 STMN3Q9NZ72 180 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 FBXW2Q9UKT8 454 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 GRID1Q9ULK0 1009 aa13.35□□□□□ -0.27
VAMP4-203ENST00000474047 FOXE1O00358 373 aaPredicted RBP13.34□□□□□ -0.27
VAMP4-203ENST00000474047 COPEO14579 308 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 IFNA16P05015 189 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 RPS17P08708 135 aaKnown RBP13.34□□□□□ -0.27
VAMP4-203ENST00000474047 MYL2P10916 166 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 IMPDH1P20839 514 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 CPN2P22792 545 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 KCNC4Q03721 635 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 CLCQ05315 142 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 ZNF33BQ06732 778 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 STX4Q12846 297 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 SLAMF1Q13291 335 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 RASA2Q15283 850 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 IGFBP7Q16270 282 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 FRG2Q64ET8 278 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 CLNKQ7Z7G1 428 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 IQCKQ8N0W5 287 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 OR2W6PQ8NHA6 318 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 CPT1CQ8TCG5 803 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 CCDC126Q96EE4 140 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 FRG2BQ96QU4 278 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 SERPINI1Q99574 410 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 PARD6BQ9BYG5 372 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 IQCGQ9H095 443 aaKnown RBP13.34□□□□□ -0.27
VAMP4-203ENST00000474047 ZBTB26Q9HCK0 441 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 ABI3Q9P2A4 366 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 SNX6Q9UNH7 406 aa13.34□□□□□ -0.27
VAMP4-203ENST00000474047 TCRBV16S1A1N1A0A5B0 115 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 WISP1O95388 367 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 KRT4P19013 534 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 TLX1P31314 330 aaPredicted RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 TSFMP43897 325 aaKnown RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 TRAF3Q13114 568 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 CUL3Q13618 768 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 CCDC153Q494R4 210 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 ZNF678Q5SXM1 525 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 C10orf62Q5T681 223 aaPredicted RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 B3GNTL1Q67FW5 361 aaPredicted RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 CYP20A1Q6UW02 462 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 ZNF793Q6ZN11 406 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 ATCAYQ86WG3 371 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 RIBC1Q8N443 379 aaPredicted RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 CCNYL1Q8N7R7 359 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 WDR20Q8TBZ3 569 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 AENQ8WTP8 325 aaKnown RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 PSMF1Q92530 271 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 ZNF354BQ96LW1 612 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 CSF3RQ99062 836 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 MAPKAP1Q9BPZ7 522 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 SORBS1Q9BX66 1292 aaKnown RBP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 C1QTNF3Q9BXJ4 246 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.33□□□□□ -0.27
VAMP4-203ENST00000474047 PLA2G3Q9NZ20 509 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 AHSPQ9NZD4 102 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 STK38LQ9Y2H1 464 aa13.33□□□□□ -0.27
VAMP4-203ENST00000474047 BLACEA4D250 179 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 SYNDIG1LA6NDD5 238 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 PLPP1O14494 284 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 CTNSO60931 367 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 MLYCDO95822 493 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 TNNI3P19429 210 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 CRHR1P34998 444 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 PRKAA2P54646 552 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 SLC26A5P58743 744 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 TLR1Q15399 786 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 INPP5JQ15735 1006 aaPredicted RBP13.33□□□□□ -0.28
VAMP4-203ENST00000474047 UNC50Q53HI1 259 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 IGFL2Q6UWQ7 119 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 Q6ZS92 163 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 C4orf33Q8N1A6 199 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 SLC5A8Q8N695 610 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 SUN3Q8TAQ9 357 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 SELENOMQ8WWX9 145 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 CAVIN3Q969G5 261 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 MMP25Q9NPA2 562 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 NMRK1Q9NWW6 199 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 MS4A12Q9NXJ0 267 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 PSD3Q9NYI0 1048 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 KCMF1Q9P0J7 381 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 PHF11Q9UIL8 331 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 PLAAQ9Y263 795 aa13.33□□□□□ -0.28
VAMP4-203ENST00000474047 SMG1Q96Q15 3661 aaKnown RBP13.32□□□□□ -0.28
VAMP4-203ENST00000474047 IGKV3D-11A0A0A0MRZ8 115 aa13.32□□□□□ -0.28
VAMP4-203ENST00000474047 ARHGAP10A1A4S6 786 aa13.32□□□□□ -0.28
VAMP4-203ENST00000474047 CYR61O00622 381 aa13.32□□□□□ -0.28
VAMP4-203ENST00000474047 VPS4BO75351 444 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms