RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PDZK1Q5T2W1 519 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 C22orf42Q6IC83 251 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 FAHD1Q6P587 224 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 VPS37AQ8NEZ2 397 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PCNPQ8WW12 178 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CMTM7Q96FZ5 175 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 OR2A14Q96R47 310 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SLC35A5Q9BS91 424 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SORBS1Q9BX66 1292 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 BARHL1Q9BZE3 327 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 OR51B5Q9H339 312 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 MRPL17Q9NRX2 175 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TMEM39AQ9NV64 488 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SAGE1Q9NXZ1 904 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 COMMD3Q9UBI1 195 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TMPRSS11EQ9UL52 423 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PRKAB1Q9Y478 270 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PCDHB11Q9Y5F2 797 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PRAMEF33A0A0G2JMD5 474 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 ABHD14A-ACY1A0A1B0GW23 586 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PRAMEF25A6NGN4 478 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 OR10H3O60404 316 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PRAMEF10O60809 474 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SLITRK5O94991 958 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 GJA1P17302 382 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 LHCGRP22888 699 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CTSOP43234 321 aaPredicted RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CDC42P60953 191 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 DOC2AQ14183 400 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SSX1Q16384 188 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SMU1Q2TAY7 513 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 IQCCQ4KMZ1 466 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 Q5BKY6 102 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CRTC1Q6UUV9 634 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 DEF8Q6ZN54 512 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TMPRSS11BQ86T26 416 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PLPP6Q8IY26 295 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 KIAA1958Q8N8K9 716 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SYT14Q8NB59 555 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 FCGR1BQ92637 280 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 RAB8BQ92930 207 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 OTULINQ96BN8 352 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CLIP3Q96DZ5 547 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 ASIC5Q9NY37 505 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 KLHL42Q9P2K6 505 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 MAN2B2Q9Y2E5 1009 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 HSPE1-MOB4S4R3N1 261 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CACNA1CQ13936 2221 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CCDC182A6NF36 153 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 GCM2O75603 506 aaPredicted RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CCNB2O95067 398 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CYP17A1P05093 508 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TSPAN19P0C672 248 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CCL5P13501 91 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SPAM1P38567 509 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 ALDH9A1P49189 494 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 WDR5P61964 334 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PRKCDQ05655 676 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 HNRNPA0Q13151 305 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SCARB2Q14108 478 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 MPPE1Q53F39 396 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 LYPLAL1Q5VWZ2 237 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 ASTLQ6HA08 431 aaPredicted RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TYW3Q6IPR3 259 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 METTL3Q86U44 580 aaKnown RBP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 UBQLNLQ8IYU4 475 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TCEANCQ8N8B7 351 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 OR2AP1Q8NGE2 309 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 ST6GAL2Q96JF0 529 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 BCL7BQ9BQE9 202 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.89□□□□□ -0.51
HDAC4-208ENST00000463007 KCTD5Q9NXV2 234 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 CFAP97Q9P2B7 532 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 MKLN1Q9UL63 735 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SPTBP11277 2137 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 A0A1B0GVC2 190 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 A6NIN4 97 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 ADAMDEC1O15204 470 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 PSKH1P11801 424 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 IL7P13232 177 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 GABRR2P28476 465 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 HLA-FP30511 346 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 HNF4AP41235 474 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 BDKRB1P46663 353 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 RFX2P48378 723 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 RPS13P62277 151 aaKnown RBP11.88□□□□□ -0.51
HDAC4-208ENST00000463007 PTSQ03393 145 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 DUSP7Q16829 419 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 ZNF385BQ569K4 471 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 C1GALT1C1Q96EU7 318 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 SCRN2Q96FV2 425 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 OR2B2Q9GZK3 357 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 SMG9Q9H0W8 520 aaKnown RBP11.88□□□□□ -0.51
HDAC4-208ENST00000463007 BRD9Q9H8M2 597 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 CFL2Q9Y281 166 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 AKR7A2O43488 359 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 SCN2BO60939 215 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 CCNYL3P0C7X3 344 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 PRKCAP17252 672 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 HOXB9P17482 250 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms