RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TRPC4Q9UBN4 977 aa14.92□□□□□ -0.02
USP40-206ENST00000443711 PHF11Q9UIL8 331 aa14.92□□□□□ -0.02
USP40-206ENST00000443711 FBXW2Q9UKT8 454 aa14.92□□□□□ -0.02
USP40-206ENST00000443711 DAPP1Q9UN19 280 aa14.92□□□□□ -0.02
USP40-206ENST00000443711 POLR3HQ9Y535 204 aaPredicted RBP14.92□□□□□ -0.02
USP40-206ENST00000443711 AHCTF1Q8WYP5 2266 aa14.92□□□□□ -0.02
USP40-206ENST00000443711 CCDC88CQ9P219 2028 aa14.92□□□□□ -0.02
USP40-206ENST00000443711 PSMD12O00232 456 aaPredicted RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 SHOX2O60902 331 aaPredicted RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 ALBP02768 609 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 PRPS2P11908 318 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 CPN2P22792 545 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 TLX1P31314 330 aaPredicted RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 ARFIP2P53365 341 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 RAB38P57729 211 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 OCA2Q04671 838 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 SYT16Q17RD7 645 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 LSM12Q3MHD2 195 aaKnown RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 IL23RQ5VWK5 629 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 MLIPQ5VWP3 458 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 LCN10Q6JVE6 187 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 FAM199XQ6PEV8 388 aaPredicted RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 COX15Q7KZN9 410 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 CACNA2D3Q8IZS8 1091 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 EFCAB3Q8N7B9 438 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 C16orf78Q8WTQ4 265 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 PEX11GQ96HA9 241 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 RILPQ96NA2 401 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 OR52B2Q96RD2 323 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 MAPKAP1Q9BPZ7 522 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 ELAC2Q9BQ52 826 aaKnown RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 EBF4Q9BQW3 602 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 C1orf50Q9BV19 199 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 TMEM120AQ9BXJ8 343 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 FAM107BQ9H098 131 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 EPN3Q9H201 632 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 SLC26A1Q9H2B4 701 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 AKIRIN1Q9H9L7 192 aaPredicted RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 ASIC5Q9NY37 505 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 NOP53Q9NZM5 478 aaKnown RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 ZNF282Q9UDV7 671 aaPredicted RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 ANGPTL2Q9UKU9 493 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 DLGAP4Q9Y2H0 992 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 WBP11Q9Y2W2 641 aaKnown RBP14.91□□□□□ -0.02
USP40-206ENST00000443711 ASB4Q9Y574 426 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 SPEGQ15772 3267 aa14.91□□□□□ -0.02
USP40-206ENST00000443711 CROCCQ5TZA2 2017 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 CACNA1AO00555 2505 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 IGLV3-12A0A075B6K2 115 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 LIPCP11150 499 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 BCKDHAP12694 445 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 PCSK2P16519 638 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 TCN2P20062 427 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 XCR1P46094 333 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 HNRNPH2P55795 449 aaKnown RBP14.9□□□□□ -0.02
USP40-206ENST00000443711 ZNF763Q0D2J5 394 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 ERMP1Q7Z2K6 904 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 DTX1Q86Y01 620 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 NKD1Q969G9 470 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 TBC1D20Q96BZ9 403 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 TM4SF18Q96CE8 201 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 OR1F2PQ96R84 312 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 FAIM2Q9BWQ8 316 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 FAM117AQ9C073 453 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 TGIF2Q9GZN2 237 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 WDR41Q9HAD4 459 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 C14orf105Q9NVL8 296 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 MRPS33Q9Y291 106 aaKnown RBP14.9□□□□□ -0.02
USP40-206ENST00000443711 ATG4BQ9Y4P1 393 aa14.9□□□□□ -0.02
USP40-206ENST00000443711 BLACEA4D250 179 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 UBDO15205 165 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 PROM1O43490 865 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 RAB40ALP0C0E4 278 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 SDC1P18827 310 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 BUD31P41223 144 aaPredicted RBP14.89□□□□□ -0.03
USP40-206ENST00000443711 STAT5AP42229 794 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 ASMTP46597 345 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 TAS2R50P59544 299 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 SF3A3Q12874 501 aaKnown RBP eCLIP14.89□□□□□ -0.03
USP40-206ENST00000443711 MRPL14Q6P1L8 145 aaKnown RBP14.89□□□□□ -0.03
USP40-206ENST00000443711 FAM198BQ6UWH4 519 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 MED25Q71SY5 747 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 SPATA21Q7Z572 469 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 FAM9CQ8IZT9 166 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 LIX1Q8N485 282 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 IL22RA1Q8N6P7 574 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 STT3BQ8TCJ2 826 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 CT55Q8WUE5 264 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 FGF11Q92914 225 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 MIEF2Q96C03 454 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 WDR54Q9H977 334 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 MYNNQ9NPC7 610 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 BAIAP2L1Q9UHR4 511 aa14.89□□□□□ -0.03
USP40-206ENST00000443711 NXT1Q9UKK6 140 aaKnown RBP14.89□□□□□ -0.03
USP40-206ENST00000443711 A0A1W2PR48 441 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 VSTM2BA6NLU5 285 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 C21orf140B9A014 251 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 FAM227AF5H4B4 570 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 CYR61O00622 381 aa14.88□□□□□ -0.03
USP40-206ENST00000443711 CLDN4O14493 209 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms