RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PRKCAP17252 672 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GADD45AP24522 165 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 BNIP2Q12982 314 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ECH1Q13011 328 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 IL10RAQ13651 578 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF77Q15935 545 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CSRP2Q16527 193 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 MEA1Q16626 185 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 RNF151Q2KHN1 245 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CNPY1Q3B7I2 92 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 FIGNQ5HY92 759 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CLNKQ7Z7G1 428 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 OR13H1Q8NG92 308 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CCDC107Q8WV48 283 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF607Q96SK3 696 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 VPS25Q9BRG1 176 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ADAP2Q9NPF8 381 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 NLGN3Q9NZ94 848 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 MARK1Q9P0L2 795 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 MCTS1Q9ULC4 181 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ARL5AQ9Y689 179 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 PTPRZ1P23471 2315 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 C2CD4BA6NLJ0 364 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TULP2O00295 520 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 E2F3O00716 465 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CHST10O43529 356 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 LINGO3P0C6S8 592 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TUBG1P23258 451 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ECHS1P30084 290 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CAV3P56539 151 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 OR1D5P58170 312 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 MEF2AQ02078 507 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 FRG1Q14331 258 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SNAPC1Q16533 368 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 NOXRED1Q6NXP6 359 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GPRIN3Q6ZVF9 776 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 USP43Q70EL4 1123 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 BTLAQ7Z6A9 289 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 COMTD1Q86VU5 262 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ACVR1CQ8NER5 493 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SPATA22Q8NHS9 363 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GPBAR1Q8TDU6 330 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 APOBEC4Q8WW27 367 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CMTM7Q96FZ5 175 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ZSWIM3Q96MP5 696 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 PAFAH2Q99487 392 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 NAA11Q9BSU3 229 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TBC1D10AQ9BXI6 508 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TLR10Q9BXR5 811 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ELL3Q9HB65 397 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TMLHEQ9NVH6 421 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TAS2R1Q9NYW7 299 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 MAGED1Q9Y5V3 778 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SCN7AQ01118 1682 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 USP54Q70EL1 1684 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 HAX1O00165 279 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 FANCGO15287 622 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 PLATP00750 562 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TFEBP19484 476 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SRP14P37108 136 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 PLCXD2Q0VAA5 305 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CHIT1Q13231 466 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GRK1Q15835 563 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ZIK1Q3SY52 487 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 NKAIN2Q5VXU1 208 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GK5Q6ZS86 529 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 LRRC55Q6ZSA7 311 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 THAP5Q7Z6K1 395 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 LRRTM3Q86VH5 581 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 P2RY8Q86VZ1 359 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 BPHLQ86WA6 291 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM173Q86WV6 379 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 IQCKQ8N0W5 287 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ARFGAP1Q8N6T3 406 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 RAB2BQ8WUD1 216 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SFXN2Q96NB2 322 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 NEDD4LQ96PU5 975 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 C19orf12Q9NSK7 152 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 LYARQ9NX58 379 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 A0A1B0GVC2 190 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CLDN9O95484 217 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SNAP29O95721 258 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 STATHP02808 62 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 RYKP34925 604 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 VASPP50552 380 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 INCA1Q0VD86 236 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 RFTN2Q52LD8 501 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 UNC5AQ6ZN44 842 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 KCTD8Q6ZWB6 473 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SSX9Q7RTT3 188 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SLC35F5Q8WV83 523 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SCAMP4Q969E2 229 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 THOC3Q96J01 351 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 CCDC74BQ96LY2 380 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 OR1F2PQ96R84 312 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF649Q9BS31 505 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 OR2B2Q9GZK3 357 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 RGCCQ9H4X1 137 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 PCDHB16Q9NRJ7 776 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 MS4A12Q9NXJ0 267 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms