RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 DOC2AQ14183 400 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 CDKN3Q16667 212 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 ZNF385BQ569K4 471 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 PDZK1Q5T2W1 519 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 TAS1R1Q7RTX1 841 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 UCK2Q9BZX2 261 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 SLA2Q9H6Q3 261 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 NINQ8N4C6 2090 aa13.11□□□□□ -0.31
USP49-201ENST00000373006 A0A0G2JMP0 313 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 ZNF840PA6NDX5 716 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 SNTNA6NMZ2 147 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 SAP18O00422 153 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 TP53P04637 393 aaPredicted RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 HBQ1P09105 142 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 C1SP09871 688 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CSF3P09919 207 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 PRKACAP17612 351 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 MVDP53602 400 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 MC1RQ01726 317 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 LARS2Q15031 903 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 TMIGD1Q6UXZ0 262 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 HS6ST3Q8IZP7 471 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 TAGAPQ8N103 731 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 HJURPQ8NCD3 748 aaPredicted RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 NMNAT1Q9HAN9 279 aaPredicted RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 POLHQ9Y253 713 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 SNX11Q9Y5W9 270 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 SYN3O14994 580 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 C6orf47O95873 294 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 IGHA2P01877 340 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 GLULP15104 373 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 KIR2DL3P43628 341 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 OR3A3P47888 321 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 HNRNPA0Q13151 305 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 PYDC2Q56P42 97 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 TPGS1Q6ZTW0 290 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CHST9Q7L1S5 443 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CDH24Q86UP0 819 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CELF5Q8N6W0 485 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 GALNT6Q8NCL4 622 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 OR9Q1Q8NGQ5 310 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CIDECQ96AQ7 238 aaPredicted RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 FRMD6Q96NE9 622 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 GFM1Q96RP9 751 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 PIP5K1AQ99755 562 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 SLC35A5Q9BS91 424 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 SGK2Q9HBY8 427 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 OR6C75A6NL08 312 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 ZAR1LA6NP61 321 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 FAM25AB3EWG3 89 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 FAM25CB3EWG5 89 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 FAM25GB3EWG6 89 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 PRMT3O60678 531 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 TSPAN19P0C672 248 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CCNYL3P0C7X3 344 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CDH18Q13634 790 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 GPR33Q49SQ1 333 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CDONQ4KMG0 1287 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 IER5LQ5T953 404 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 C22orf42Q6IC83 251 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 WDR20Q8TBZ3 569 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 ZIC5Q96T25 663 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.1□□□□□ -0.311e-6■■■■■ 31.5
USP49-201ENST00000373006 MIXL1Q9H2W2 232 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 ZDHHC3Q9NYG2 299 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 CNOT2Q9NZN8 540 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 MALT1Q9UDY8 824 aa13.1□□□□□ -0.31
USP49-201ENST00000373006 YARS2Q9Y2Z4 477 aaKnown RBP13.1□□□□□ -0.31
USP49-201ENST00000373006 A0A0C4DFX4 3053 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 H3BN98 237 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 NUPL2O15504 423 aaKnown RBP13.09□□□□□ -0.31
USP49-201ENST00000373006 CBSLP0DN79 551 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 CTGFP29279 349 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 CBSP35520 551 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 CAV3P56539 151 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 DUSP7Q16829 419 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 LYPLAL1Q5VWZ2 237 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 FAM205BPQ63HN1 556 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 CRTC1Q6UUV9 634 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 YIPF7Q8N8F6 280 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 C7orf57Q8NEG2 295 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 TRIM63Q969Q1 353 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 SAMD11Q96NU1 681 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 MRPL9Q9BYD2 267 aaKnown RBP13.09□□□□□ -0.31
USP49-201ENST00000373006 RNF121Q9H920 327 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 FTSJ1Q9UET6 329 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 TRAV19A0A0A6YYK7 116 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 SH3D21A4FU49 640 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 ZNF670-ZNF695F2Z2N8 137 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 TLR4O00206 839 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 GPC1P35052 558 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 HNMTP50135 292 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 NAE1Q13564 534 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 TSTA3Q13630 321 aaPredicted RBP13.09□□□□□ -0.31
USP49-201ENST00000373006 TOR1AIP1Q5JTV8 583 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 GCNT6Q5T4J0 391 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 FAM46DQ8NEK8 389 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 GRPEL2Q8TAA5 225 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 ACOXLQ9NUZ1 547 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 BTNL2Q9UIR0 455 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms